Plant Circular RNA Database

Detail information of AT2G28540_circ_g.8

			
						 General Information
					
						CircRNA Name
						AT2G28540_circ_g.8
					
						ID in PlantcircBase
						ath_circ_015400
					
						Alias
						At_ciR5478
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 12219704-12223333  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							AT2G28540						
					
						Parent gene annotation
						
							Putative uncharacterized protein At2g28540
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT2G28540_circ_g.2 AT2G28540_circ_g.3 AT2G28540_circ_g.4 AT2G28540_circ_g.5 AT2G28540_circ_g.6 AT2G28540_circ_g.7 AT2G28540_circ_g.9 AT2G28540_circ_g.10 						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G28540.2:9
AT2G28540.1:9

General Information
CircRNA Name	AT2G28540_circ_g.8
ID in PlantcircBase	ath_circ_015400
Alias	At_ciR5478
Organism	Arabidpsis thaliana
Position	chr2: 12219704-12223333 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ
Parent gene	AT2G28540
Parent gene annotation	Putative uncharacterized protein At2g28540
Parent gene strand	+
Alternative splicing	AT2G28540_circ_g.2 AT2G28540_circ_g.3 AT2G28540_circ_g.4 AT2G28540_circ_g.5 AT2G28540_circ_g.6 AT2G28540_circ_g.7 AT2G28540_circ_g.9 AT2G28540_circ_g.10
Support reads	2
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G28540.2:9 AT2G28540.1:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGGCTTTGAGAATGCAAGCCTAGATTTCAGATCAAACTTTCAAGGAAACACAAACATGTATGGA
AGCGCGGCAAAGCTCCAACAACAACAACAACAAGCGatgtttcagcgaagagaatactttggtc
aatatgggaaagtcgtcaaagtagcaatgtctcggactgcagctggggctgtccaacaatttcc
aaacaata

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATGTTTCAGCGAAGAGAATACTTTGGTCAATATGGGAAAGTCGTCAAAGTAGCAATGTCTCGGA
CTGCAGCTGGGGCTGTCCAACAATTTCCAAACAATACTTGCAGTGTGTATGTATCCGTATTTCT
TTACACATTCGAATGATTGTATCTAGTTCTTGATGAACTAATATTTGTGAGTCCATATAGCTAA
GCACAACCCCATTTCTTTCTGCGGTCTATTTGACATGTTTGCTTTTAACAAACTTCATTGAGCT
AACATTTTCGTTTTTGTCTAAAATTGAATTTCCCAGATATATTACTTACTCCAAAGAGGAGGAA
GCGATTCGATGTATCCGATCAGTACATGGATTTATATTGGATGGTAGAAATTTGAAGTATGTTA
TGTTTTCTTTTTTTTTCAAAAATAGTTATGGTAGCCTGTGGTTCAATTTCTAATATATTTTTGG
ATGTCGTTAGGGCATGTTTTGGAACCATGAAATATTGTCATGCGTGGTTGAGAAACATGGTAAG
CAGATATTGACTTGCTTTTGCTCACTAGGTCCCTCTATATACTTAAATACAAATCCAATTGTGT
TTCGTGGATGCCTTTTTGTTTCAGCCTTGCTCCAATGCTGAATGCCTTTATTTGCATGAGATTG
GTGCCCAAGAGGATAGTTTCTCAAAAGATGAGACCATATCAGCGCACATGAGGTAAATTAATTT
CAATAATCTCTGCCTTTTAGTTAAATGAAATAGATTGTGGTTGATTCTTGTTTTTCGTTGATGT
TGATGTTGGGCTCCGTTAGTGAAGTATACTTTAATTGACATTAATATTGCATTTAGCTCATGTT
TTGTGGATGCAGATGTGAACTTGTTCACTAGCTGGTTTTCTTTGAAAGTTTTAACACCCATCCT
TTCTTGAAGCTAGGAGAGATTTGATTTTATATCAGTAATTTCTTCTGCTCTATATGTTGTGCTC
GTTAGGTGGTTATCTGATTCCCGTTCTGTTTGAATAGGAAAATGGTTCAAGATATTACTGGTTG
GAGGGATCATTATGTGCGGCGTTCAGGGAGCATGTTACCTCCACCAGTTGATGATTATGTTGAT
AATGAGTCTAGCACAAGAATTATTCCAAAAGTTGTTTTGAATGTAAGTTGCCAACTCTTCTTGG
AGCTTCCTGAATTTTTTCTGCTCTCAGCATATTCACATGCCGTTATACTTTATGAGAAGGACTA
GATGCGTTTATGTGTGATAAATTCTGCTTTTGACTTCTTTCTTATTCGCCCTTTTTTTTCCTTT
GCAGAATGTACATAGTGCCGCGAAAAATTCTCCTCCAAATGACAGCAACAGTCACTCTGTTACT
CTTCCTGCTGGAGCCATGTGGTACACTGAATTCTTATGATAATGTTTTTTTTAATTGCTTTGTC
TGAGAAACTTAACTTGTTTTTCAGGGGAATGCATTCTTCGGTACCGAATACACCGTCTTCTAGG
GAACCCTTAAGAGACAAATCTGCTACAGTTTCATCTGCGGTTGCAATCAATCCTACACAGATCT
CTTCTCGTAGTGATGAATTAAGGAAGCCAGCATTAGAGGCTGCAGGTGGAAATGTTTTGAAACC
ACAAAGCCTATTGGATGGGAAAACTGATTTTCCTGAGCTTTCCTCATCTAATAAGACCCAGATC
AGTAATAGTAGGAACGTAGTCTCTGCCAGTGTGGATAATAGTAGAGCTATTAGTGAGCCATCAG
ATTGCACAGACCTTCCAGAACATACTTCTCTGTCTAATGGAAACAAAATGATTAACAGAAGAAT
ACAGAATGGATGCAGCAATGTTGTGTCAGTGGATGCAGATAGTGTTGTGGATGGCTATCATGGA
ATAACAAGATCTGACAAATCACATATTGATCATGCTTCCATAAAGCCAACTCTTACAGAGGTGT
CCCAAGACTATTTACAGCGTTGTGTCGATGAACCTAGAGAAGTTCAGCCATTACAAAAGTCTGG
TAGAACTAACGCAAATGAGGTTGGTGTCTCGAGAGAAGAAGTTAATAGAGGTACTTCTTTGATG
TCACCATTGGGAACAGGTCATTATCTTGAAGCTGAGGATGATATATCTTTGTTCTATAGACAAA
GACTCAAGGATCCGGAAGTTCTTAGCTGTCAGTCCAATGGTTTCCTACGCCCGTCAAATTGTAT
GCAGCCTTGTTCATCCCAGTATAAGGCTGAGCATGATGAAACCAGGACTGTGTTTGGATCTTCC
TATTCTGACAGCAGGGGAAGTAATATAGCACCCATCTCAAATGGATATACCGAGATGCCACTTA
GTGAGCCCAATCAGTTAAACGGCAGTCTTAACCATTCTATTTTGGTTCCAGACAAAGCAAGGGA
CACACAGCCAATTGAAAATTGTTTCGTTGACTCCCATGAAAGCCCAAGTGAAATAGATGACAGG
ATAATTGCAAATATAATGTCTTTAGATCTTGATGAATACTTAACTTCACCTCATAACTATGCAA
ATCCATTTGGGGAAAGTGACGAAGAGGCCAGGTCTCTTAAGCTAGCCAGTTCCAGTAAAGTTGA
GGATAATCAATCCCGGTTTTCTTTTGCCAGGCAAGAGGAACCAAAGGATCAAGCTTTTGATTCT
TACAACGCCTCTAACCAGATGTCACGTGGCAATGACTTCTACCAGAATTCTTCAGAACGACAGA
GTCCTAATATGGGTATGTTTGGGACCTATAATGGTCTTTCATCTTGTTATCGCAGGGGACTAGA
CTACGTCACGGAAAGCTCCACTTTGCCCTCATCCTATAAACCTACTTGTGAGTGTTGATTTCTT
GTCCTTACCTTTATCTTCTAGCCTTCTTTGTCCATGTTTACTTATACTGCACCAAACTGGTTCT
GTCTGGTTGATGGTTATAAATTTCAAACACTATCTATCTAGTGCCGGGCAATAATAATGTTTAT
AACATCTAGTGCGGCTTAGGCGTATTGGTATGTTAGGTGCTGAAAATGAATAGATGGCTTTATG
TTCGGCATATTTCCACTGTTTTGAGTTAATGTGTTTCTTGGTTATGGAAATATTATACTTCCGG
GATATTGACTTTGGCGTGTTTTGGAGCATTTGTGTGATGAAGCCATAGTGCCTACATATTATTG
GGATTATGGAGCATTTGTGTAATCTTAATCAATCCTTTGTTTTTTTGTCTTGTAGCTGTTCCAA
GATGTCCGGTTTCAGCACCACCTGGCTTTTCAGTTCCAACTCCAAGTCGACCTCCTCCTCCAGG
CTTCTCCTCAAATGGGAGAGACCATCAGATGATTGATGGCTTTTCAGGTAGTTTATATATCTTT
AAAGTTTCTTGGGATCTCATGATGAATCGCATATGTTGCTGCCACCTATCTCTAGATATATTAA
CTATTTGTTCTCGTTACTTGTAGGAAACTCTCGTTTTTCTGATTCAATTGCGTACGGTAATCAC
TATCAGCAGTCACTTCCGATTGAAAATGTGAGGGATGTTCAATACATGGATCCTGCCATTTTGG
CCGTTGGTCAAGGCTTTGAGAATGCAAGCCTAGATTTCAGATCAAACTTTCAAGGAAACACAAA
CATGTATGGAAGCGCGGCAAAGCTCCAACAACAACAACAACAAGCG
						
					

			
		

Sequences
Splice junction sequence	AGGCTTTGAGAATGCAAGCCTAGATTTCAGATCAAACTTTCAAGGAAACACAAACATGTATGGA AGCGCGGCAAAGCTCCAACAACAACAACAACAAGCGatgtttcagcgaagagaatactttggtc aatatgggaaagtcgtcaaagtagcaatgtctcggactgcagctggggctgtccaacaatttcc aaacaata
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATGTTTCAGCGAAGAGAATACTTTGGTCAATATGGGAAAGTCGTCAAAGTAGCAATGTCTCGGA CTGCAGCTGGGGCTGTCCAACAATTTCCAAACAATACTTGCAGTGTGTATGTATCCGTATTTCT TTACACATTCGAATGATTGTATCTAGTTCTTGATGAACTAATATTTGTGAGTCCATATAGCTAA GCACAACCCCATTTCTTTCTGCGGTCTATTTGACATGTTTGCTTTTAACAAACTTCATTGAGCT AACATTTTCGTTTTTGTCTAAAATTGAATTTCCCAGATATATTACTTACTCCAAAGAGGAGGAA GCGATTCGATGTATCCGATCAGTACATGGATTTATATTGGATGGTAGAAATTTGAAGTATGTTA TGTTTTCTTTTTTTTTCAAAAATAGTTATGGTAGCCTGTGGTTCAATTTCTAATATATTTTTGG ATGTCGTTAGGGCATGTTTTGGAACCATGAAATATTGTCATGCGTGGTTGAGAAACATGGTAAG CAGATATTGACTTGCTTTTGCTCACTAGGTCCCTCTATATACTTAAATACAAATCCAATTGTGT TTCGTGGATGCCTTTTTGTTTCAGCCTTGCTCCAATGCTGAATGCCTTTATTTGCATGAGATTG GTGCCCAAGAGGATAGTTTCTCAAAAGATGAGACCATATCAGCGCACATGAGGTAAATTAATTT CAATAATCTCTGCCTTTTAGTTAAATGAAATAGATTGTGGTTGATTCTTGTTTTTCGTTGATGT TGATGTTGGGCTCCGTTAGTGAAGTATACTTTAATTGACATTAATATTGCATTTAGCTCATGTT TTGTGGATGCAGATGTGAACTTGTTCACTAGCTGGTTTTCTTTGAAAGTTTTAACACCCATCCT TTCTTGAAGCTAGGAGAGATTTGATTTTATATCAGTAATTTCTTCTGCTCTATATGTTGTGCTC GTTAGGTGGTTATCTGATTCCCGTTCTGTTTGAATAGGAAAATGGTTCAAGATATTACTGGTTG GAGGGATCATTATGTGCGGCGTTCAGGGAGCATGTTACCTCCACCAGTTGATGATTATGTTGAT AATGAGTCTAGCACAAGAATTATTCCAAAAGTTGTTTTGAATGTAAGTTGCCAACTCTTCTTGG AGCTTCCTGAATTTTTTCTGCTCTCAGCATATTCACATGCCGTTATACTTTATGAGAAGGACTA GATGCGTTTATGTGTGATAAATTCTGCTTTTGACTTCTTTCTTATTCGCCCTTTTTTTTCCTTT GCAGAATGTACATAGTGCCGCGAAAAATTCTCCTCCAAATGACAGCAACAGTCACTCTGTTACT CTTCCTGCTGGAGCCATGTGGTACACTGAATTCTTATGATAATGTTTTTTTTAATTGCTTTGTC TGAGAAACTTAACTTGTTTTTCAGGGGAATGCATTCTTCGGTACCGAATACACCGTCTTCTAGG GAACCCTTAAGAGACAAATCTGCTACAGTTTCATCTGCGGTTGCAATCAATCCTACACAGATCT CTTCTCGTAGTGATGAATTAAGGAAGCCAGCATTAGAGGCTGCAGGTGGAAATGTTTTGAAACC ACAAAGCCTATTGGATGGGAAAACTGATTTTCCTGAGCTTTCCTCATCTAATAAGACCCAGATC AGTAATAGTAGGAACGTAGTCTCTGCCAGTGTGGATAATAGTAGAGCTATTAGTGAGCCATCAG ATTGCACAGACCTTCCAGAACATACTTCTCTGTCTAATGGAAACAAAATGATTAACAGAAGAAT ACAGAATGGATGCAGCAATGTTGTGTCAGTGGATGCAGATAGTGTTGTGGATGGCTATCATGGA ATAACAAGATCTGACAAATCACATATTGATCATGCTTCCATAAAGCCAACTCTTACAGAGGTGT CCCAAGACTATTTACAGCGTTGTGTCGATGAACCTAGAGAAGTTCAGCCATTACAAAAGTCTGG TAGAACTAACGCAAATGAGGTTGGTGTCTCGAGAGAAGAAGTTAATAGAGGTACTTCTTTGATG TCACCATTGGGAACAGGTCATTATCTTGAAGCTGAGGATGATATATCTTTGTTCTATAGACAAA GACTCAAGGATCCGGAAGTTCTTAGCTGTCAGTCCAATGGTTTCCTACGCCCGTCAAATTGTAT GCAGCCTTGTTCATCCCAGTATAAGGCTGAGCATGATGAAACCAGGACTGTGTTTGGATCTTCC TATTCTGACAGCAGGGGAAGTAATATAGCACCCATCTCAAATGGATATACCGAGATGCCACTTA GTGAGCCCAATCAGTTAAACGGCAGTCTTAACCATTCTATTTTGGTTCCAGACAAAGCAAGGGA CACACAGCCAATTGAAAATTGTTTCGTTGACTCCCATGAAAGCCCAAGTGAAATAGATGACAGG ATAATTGCAAATATAATGTCTTTAGATCTTGATGAATACTTAACTTCACCTCATAACTATGCAA ATCCATTTGGGGAAAGTGACGAAGAGGCCAGGTCTCTTAAGCTAGCCAGTTCCAGTAAAGTTGA GGATAATCAATCCCGGTTTTCTTTTGCCAGGCAAGAGGAACCAAAGGATCAAGCTTTTGATTCT TACAACGCCTCTAACCAGATGTCACGTGGCAATGACTTCTACCAGAATTCTTCAGAACGACAGA GTCCTAATATGGGTATGTTTGGGACCTATAATGGTCTTTCATCTTGTTATCGCAGGGGACTAGA CTACGTCACGGAAAGCTCCACTTTGCCCTCATCCTATAAACCTACTTGTGAGTGTTGATTTCTT GTCCTTACCTTTATCTTCTAGCCTTCTTTGTCCATGTTTACTTATACTGCACCAAACTGGTTCT GTCTGGTTGATGGTTATAAATTTCAAACACTATCTATCTAGTGCCGGGCAATAATAATGTTTAT AACATCTAGTGCGGCTTAGGCGTATTGGTATGTTAGGTGCTGAAAATGAATAGATGGCTTTATG TTCGGCATATTTCCACTGTTTTGAGTTAATGTGTTTCTTGGTTATGGAAATATTATACTTCCGG GATATTGACTTTGGCGTGTTTTGGAGCATTTGTGTGATGAAGCCATAGTGCCTACATATTATTG GGATTATGGAGCATTTGTGTAATCTTAATCAATCCTTTGTTTTTTTGTCTTGTAGCTGTTCCAA GATGTCCGGTTTCAGCACCACCTGGCTTTTCAGTTCCAACTCCAAGTCGACCTCCTCCTCCAGG CTTCTCCTCAAATGGGAGAGACCATCAGATGATTGATGGCTTTTCAGGTAGTTTATATATCTTT AAAGTTTCTTGGGATCTCATGATGAATCGCATATGTTGCTGCCACCTATCTCTAGATATATTAA CTATTTGTTCTCGTTACTTGTAGGAAACTCTCGTTTTTCTGATTCAATTGCGTACGGTAATCAC TATCAGCAGTCACTTCCGATTGAAAATGTGAGGGATGTTCAATACATGGATCCTGCCATTTTGG CCGTTGGTCAAGGCTTTGAGAATGCAAGCCTAGATTTCAGATCAAACTTTCAAGGAAACACAAA CATGTATGGAAGCGCGGCAAAGCTCCAACAACAACAACAACAAGCG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.101581028

Conservation Information
Conserved circRNAs	NA
PMCS	0.101581028

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							12219704-12223330(+)
						
					

						Potential amino acid sequence
						
							MFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVHGFILDGRNL
KACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQDITGWRDHYVRR
SGSMLPPPVDDYVDNESSTRIIPKVVLNNVHSAAKNSPPNDSNSHSVTLPAGAMWGMHSSVPNT
PSSREPLRDKSATVSSAVAINPTQISSRSDELRKPALEAAGGNVLKPQSLLDGKTDFPELSSSN
KTQISNSRNVVSASVDNSRAISEPSDCTDLPEHTSLSNGNKMINRRIQNGCSNVVSVDADSVVD
GYHGITRSDKSHIDHASIKPTLTEVSQDYLQRCVDEPREVQPLQKSGRTNANEVGVSREEVNRG
TSLMSPLGTGHYLEAEDDISLFYRQRLKDPEVLSCQSNGFLRPSNCMQPCSSQYKAEHDETRTV
FGSSYSDSRGSNIAPISNGYTEMPLSEPNQLNGSLNHSILVPDKARDTQPIENCFVDSHESPSE
IDDRIIANIMSLDLDEYLTSPHNYANPFGESDEEARSLKLASSSKVEDNQSRFSFARQEEPKDQ
AFDSYNASNQMSRGNDFYQNSSERQSPNMGMFGTYNGLSSCYRRGLDYVTESSTLPSSYKPTSV
PRCPVSAPPGFSVPTPSRPPPPGFSSNGRDHQMIDGFSGNSRFSDSIAYGNHYQQSLPIENVRD
VQYMDPAILAVGQGFENASLDFRSNFQGNTNMYGSAAKLQQQQQQAMFQRREYFGQYGKVVKVA
MSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVHGFILDGRNLKACFGTMKYCHAWLRNMP
CSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQDITGWRDHYVRRSGSMLPPPVDDYVDNESS
TRIIPKVVLNNVHSAAKNSPPNDSNSHSVTLPAGAMWGMHSSVPNTPSSREPLRDKSATVSSAV
AINPTQISSRSDELRKPALEAAGGNVLKPQSLLDGKTDFPELSSSNKTQISNSRNVVSASVDNS
RAISEPSDCTDLPEHTSLSNGNKMINRRIQNGCSNVVSVDADSVVDGYHGITRSDKSHIDHASI
KPTLTEVSQDYLQRCVDEPREVQPLQKSGRTNANEVGVSREEVNRGTSLMSPLGTGHYLEAEDD
ISLFYRQRLKDPEVLSCQSNGFLRPSNCMQPCSSQYKAEHDETRTVFGSSYSDSRGSNIAPISN
GYTEMPLSEPNQLNGSLNHSILVPDKARDTQPIENCFVDSHESPSEIDDRIIANIMSLDLDEYL
TSPHNYANPFGESDEEARSLKLASSSKVEDNQSRFSFARQEEPKDQAFDSYNASNQMSRGNDFY
QNSSERQSPNMGMFGTYNGLSSCYRRGLDYVTESSTLPSSYKPTSVPRCPVSAPPGFSVPTPSR
PPPPGFSSNGRDHQMIDGFSGNSRFSDSIAYGNHYQQSLPIENVRDVQYMDPAILAVGQGFENA
SLDFRSNFQGNTNMYGSAAKLQQQQQQAMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCS
VYITYSKEEEAIRCIRSVHGFILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDS
FSKDETISAHMRKMVQDITGWRDHYVRRSGSMLPPPVDDYVDNESSTRIIPKVVLNNVHSAAKN
SPPNDSNSHSVTLPAGAMWGMHSSVPNTPSSREPLRDKSATVSSAVAINPTQISSRSDELRKPA
LEAAGGNVLKPQSLLDGKTDFPELSSSNKTQISNSRNVVSASVDNSRAISEPSDCTDLPEHTSL
SNGNKMINRRIQNGCSNVVSVDADSVVDGYHGITRSDKSHIDHASIKPTLTEVSQDYLQRCVDE
PREVQPLQKSGRTNANEVGVSREEVNRGTSLMSPLGTGHYLEAEDDISLFYRQRLKDPEVLSCQ
SNGFLRPSNCMQPCSSQYKAEHDETRTVFGSSYSDSRGSNIAPISNGYTEMPLSEPNQLNGSLN
HSILVPDKARDTQPIENCFVDSHESPSEIDDRIIANIMSLDLDEYLTSPHNYANPFGESDEEAR
SLKLASSSKVEDNQSRFSFARQEEPKDQAFDSYNASNQMSRGNDFYQNSSERQSPNMGMFGTYN
GLSSCYRRGLDYVTESSTLPSSYKPTSVPRCPVSAPPGFSVPTPSRPPPPGFSSNGRDHQMIDG
FSGNSRFSDSIAYGNHYQQSLPIENVRDVQYMDPAILAVGQGFENASLDFRSNFQGNTNMYGSA
AKLQQQQQQAMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSV
HGFILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQDI
TGWRDHYVRRSGSMLPPPVDDYVDNESSTRIIPKVVLNNVHSAAKNSPPNDSNSHSVTLPAGAM
WGMHSSVPNTPSSREPLRDKSATVSSAVAINPTQISSRSDELRKPALEAAGGNVLKPQSLLDGK
TDFPELSSSNKTQISNSRNVVSASVDNSRAISEPSDCTDLPEHTSLSNGNKMINRRIQNGCSNV
VSVDADSVVDGYHGITRSDKSHIDHASIKPTLTEVSQDYLQRCVDEPREVQPLQKSGRTNANEV
GVSREEVNRGTSLMSPLGTGHYLEAEDDISLFYRQRLKDPEVLSCQSNGFLRPSNCMQPCSSQY
KAEHDETRTVFGSSYSDSRGSNIAPISNGYTEMPLSEPNQLNGSLNHSILVPDKARDTQPIENC
FVDSHESPSEIDDRIIANIMSLDLDEYLTSPHNYANPFGESDEEARSLKLASSSKVEDNQSRFS
FARQEEPKDQAFDSYNASNQMSRGNDFYQNSSERQSPNMGMFGTYNGLSSCYRRGLDYVTESST
LPSSYKPTSVPRCPVSAPPGFSVPTPSRPPPPGFSSNGRDHQMIDGFSGNSRFSDSIAYGNHYQ
QSLPIENVRDVQYMDPAILAVGQGFENASLDFRSNFQGNTNMYGSAAKLQQQQQQA(+)
						
					

						Sponge-miRNAs
						
							ath-miR779.2 						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	12219704-12223330(+)
Potential amino acid sequence	MFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVHGFILDGRNL KACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQDITGWRDHYVRR SGSMLPPPVDDYVDNESSTRIIPKVVLNNVHSAAKNSPPNDSNSHSVTLPAGAMWGMHSSVPNT PSSREPLRDKSATVSSAVAINPTQISSRSDELRKPALEAAGGNVLKPQSLLDGKTDFPELSSSN KTQISNSRNVVSASVDNSRAISEPSDCTDLPEHTSLSNGNKMINRRIQNGCSNVVSVDADSVVD GYHGITRSDKSHIDHASIKPTLTEVSQDYLQRCVDEPREVQPLQKSGRTNANEVGVSREEVNRG TSLMSPLGTGHYLEAEDDISLFYRQRLKDPEVLSCQSNGFLRPSNCMQPCSSQYKAEHDETRTV FGSSYSDSRGSNIAPISNGYTEMPLSEPNQLNGSLNHSILVPDKARDTQPIENCFVDSHESPSE IDDRIIANIMSLDLDEYLTSPHNYANPFGESDEEARSLKLASSSKVEDNQSRFSFARQEEPKDQ AFDSYNASNQMSRGNDFYQNSSERQSPNMGMFGTYNGLSSCYRRGLDYVTESSTLPSSYKPTSV PRCPVSAPPGFSVPTPSRPPPPGFSSNGRDHQMIDGFSGNSRFSDSIAYGNHYQQSLPIENVRD VQYMDPAILAVGQGFENASLDFRSNFQGNTNMYGSAAKLQQQQQQAMFQRREYFGQYGKVVKVA MSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVHGFILDGRNLKACFGTMKYCHAWLRNMP CSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQDITGWRDHYVRRSGSMLPPPVDDYVDNESS TRIIPKVVLNNVHSAAKNSPPNDSNSHSVTLPAGAMWGMHSSVPNTPSSREPLRDKSATVSSAV AINPTQISSRSDELRKPALEAAGGNVLKPQSLLDGKTDFPELSSSNKTQISNSRNVVSASVDNS RAISEPSDCTDLPEHTSLSNGNKMINRRIQNGCSNVVSVDADSVVDGYHGITRSDKSHIDHASI KPTLTEVSQDYLQRCVDEPREVQPLQKSGRTNANEVGVSREEVNRGTSLMSPLGTGHYLEAEDD ISLFYRQRLKDPEVLSCQSNGFLRPSNCMQPCSSQYKAEHDETRTVFGSSYSDSRGSNIAPISN GYTEMPLSEPNQLNGSLNHSILVPDKARDTQPIENCFVDSHESPSEIDDRIIANIMSLDLDEYL TSPHNYANPFGESDEEARSLKLASSSKVEDNQSRFSFARQEEPKDQAFDSYNASNQMSRGNDFY QNSSERQSPNMGMFGTYNGLSSCYRRGLDYVTESSTLPSSYKPTSVPRCPVSAPPGFSVPTPSR PPPPGFSSNGRDHQMIDGFSGNSRFSDSIAYGNHYQQSLPIENVRDVQYMDPAILAVGQGFENA SLDFRSNFQGNTNMYGSAAKLQQQQQQAMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCS VYITYSKEEEAIRCIRSVHGFILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDS FSKDETISAHMRKMVQDITGWRDHYVRRSGSMLPPPVDDYVDNESSTRIIPKVVLNNVHSAAKN SPPNDSNSHSVTLPAGAMWGMHSSVPNTPSSREPLRDKSATVSSAVAINPTQISSRSDELRKPA LEAAGGNVLKPQSLLDGKTDFPELSSSNKTQISNSRNVVSASVDNSRAISEPSDCTDLPEHTSL SNGNKMINRRIQNGCSNVVSVDADSVVDGYHGITRSDKSHIDHASIKPTLTEVSQDYLQRCVDE PREVQPLQKSGRTNANEVGVSREEVNRGTSLMSPLGTGHYLEAEDDISLFYRQRLKDPEVLSCQ SNGFLRPSNCMQPCSSQYKAEHDETRTVFGSSYSDSRGSNIAPISNGYTEMPLSEPNQLNGSLN HSILVPDKARDTQPIENCFVDSHESPSEIDDRIIANIMSLDLDEYLTSPHNYANPFGESDEEAR SLKLASSSKVEDNQSRFSFARQEEPKDQAFDSYNASNQMSRGNDFYQNSSERQSPNMGMFGTYN GLSSCYRRGLDYVTESSTLPSSYKPTSVPRCPVSAPPGFSVPTPSRPPPPGFSSNGRDHQMIDG FSGNSRFSDSIAYGNHYQQSLPIENVRDVQYMDPAILAVGQGFENASLDFRSNFQGNTNMYGSA AKLQQQQQQAMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSV HGFILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQDI TGWRDHYVRRSGSMLPPPVDDYVDNESSTRIIPKVVLNNVHSAAKNSPPNDSNSHSVTLPAGAM WGMHSSVPNTPSSREPLRDKSATVSSAVAINPTQISSRSDELRKPALEAAGGNVLKPQSLLDGK TDFPELSSSNKTQISNSRNVVSASVDNSRAISEPSDCTDLPEHTSLSNGNKMINRRIQNGCSNV VSVDADSVVDGYHGITRSDKSHIDHASIKPTLTEVSQDYLQRCVDEPREVQPLQKSGRTNANEV GVSREEVNRGTSLMSPLGTGHYLEAEDDISLFYRQRLKDPEVLSCQSNGFLRPSNCMQPCSSQY KAEHDETRTVFGSSYSDSRGSNIAPISNGYTEMPLSEPNQLNGSLNHSILVPDKARDTQPIENC FVDSHESPSEIDDRIIANIMSLDLDEYLTSPHNYANPFGESDEEARSLKLASSSKVEDNQSRFS FARQEEPKDQAFDSYNASNQMSRGNDFYQNSSERQSPNMGMFGTYNGLSSCYRRGLDYVTESST LPSSYKPTSVPRCPVSAPPGFSVPTPSRPPPPGFSSNGRDHQMIDGFSGNSRFSDSIAYGNHYQ QSLPIENVRDVQYMDPAILAVGQGFENASLDFRSNFQGNTNMYGSAAKLQQQQQQA(+)
Sponge-miRNAs	ath-miR779.2
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of AT2G28540_circ_g.8

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