Plant Circular RNA Database

Detail information of Os02g0118500_circ_ig.2

			
						 General Information
					
						CircRNA Name
						Os02g0118500_circ_ig.2
					
						ID in PlantcircBase
						osa_circ_012783
					
						Alias
						Os_ciR729
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 968316-974462  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os02g0118400_circ_g.1 Os02g0118400_circ_ag.1 Os02g0118400_circ_ag.2 Os02g0118400_circ_ag.3 Os02g0118400_circ_ag.4 Os02g0118400_circ_ag.5 Os02g0118500_circ_ig.1 Os02g0118500_circ_ig.3 Os02g0118500_circ_ig.4 Os02g0118500_circ_ig.5 Os02g0118500_circ_ig.6 EPlOSAG00000037336_circ_ig.1 						
					
						Support reads
						35
					
						Tissues
						root
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os02g0118500_circ_ig.2
ID in PlantcircBase	osa_circ_012783
Alias	Os_ciR729
Organism	Oryza sativa
Position	chr2: 968316-974462 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ig-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os02g0118400_circ_g.1 Os02g0118400_circ_ag.1 Os02g0118400_circ_ag.2 Os02g0118400_circ_ag.3 Os02g0118400_circ_ag.4 Os02g0118400_circ_ag.5 Os02g0118500_circ_ig.1 Os02g0118500_circ_ig.3 Os02g0118500_circ_ig.4 Os02g0118500_circ_ig.5 Os02g0118500_circ_ig.6 EPlOSAG00000037336_circ_ig.1
Support reads	35
Tissues	root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCTGAAGAAGTGGAGCTTGAGACTGAGATGAGGAGCATGTATGACGCCGAGGATGTCATGGACG
AGCTTGACTACTACCGGCTCCAGCAACACATCGAAGggcttgttctagcctccgtcgccttagt
tgcagtgtggataatggggttggttgccactgcaattgaggctgcaataggatgggtggttgag
agcatcct

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 386
Transcript exons: 968316-968384,968614-968655,968934-969094,974349-974462
GGCTTGTTCTAGCCTCCGTCGCCTTAGTTGCAGTGTGGATAATGGGGTTGGTTGCCACTGCAAT
TGAGGGGACGAGCTTGATTACTACCGGCTCCAGCAACACATCGAAGGAGGGAAAGGTTCTACTG
CTGCTTCTTGTACTAACCCTGAGGGAAGTTATGTGTCTTCATCCACTCCATCTTACTTCCAACG
AGTAAGCAACAGCATAAATCAAATATTAGTTGGCCTATGCATGGAAAGAAAAGGAAAAGAGAGG
AAGAAGAGGAGCAAACGTGAAGTTGGCCTTTCTGAAGAAGTGGAGCTTGAGACTGAGATGAGGA
GCATGTATGACGCCGAGGATGTCATGGACGAGCTTGACTACTACCGGCTCCAGCAACACATCGA
AG
Transcript length: 411
Transcript exons: 968316-968396,968614-968655,968934-969094,974336-974462
GGCTTGTTCTAGCCTCCGTCGCCTTAGTTGCAGTGTGGATAATGGGGTTGGTTGCCACTGCAAT
TGAGGCTGCAATAGGATGGACGAGCTTGATTACTACCGGCTCCAGCAACACATCGAAGGAGGGA
AAGGTTCTACTGCTGCTTCTTGTACTAACCCTGAGGGAAGTTATGTGTCTTCATCCACTCCATC
TTACTTCCAACGAGTAAGCAACAGCATAAATCAAATATTAGTTGGCCTATGCATGGAAAGAAAA
GGAAAAGAGAGGAAGAAGAGGAGCAAACCAAGTGTGGACTCGTGAAGTTGGCCTTTCTGAAGAA
GTGGAGCTTGAGACTGAGATGAGGAGCATGTATGACGCCGAGGATGTCATGGACGAGCTTGACT
ACTACCGGCTCCAGCAACACATCGAAG
Transcript length: 492
Transcript exons: 968316-968459,968615-968655,968934-969126,974349-974462
GGCTTGTTCTAGCCTCCGTCGCCTTAGTTGCAGTGTGGATAATGGGGTTGGTTGCCACTGCAAT
TGAGGCTGCAATAGGATGGGTGGTTGAGAGCATCCTCGGAAATTTCTTCACTGGACAGATGCAA
GTGTGGACTCGTGAAGGACGAGCTTGATTACTACCGGCTCCAGCAACACATCGAAGGAGGGAAA
GGTTCTACTGCTGCTTCTTGTACTAACCCTGAGGGAAGTTATGTGTCTTCATCCACTCCATCTT
ACTTCCAACGAGTAAGCAACAGCATAAATCAAATATTAGTTGGCCTATGCATGGAAAGAAAAGG
AAAAGAGAGGAAGAAGAGGAGCAAACTCATAGCACCATGCTGCCTCTTGAGATTAAACGTGAAG
TTGGCCTTTCTGAAGAAGTGGAGCTTGAGACTGAGATGAGGAGCATGTATGACGCCGAGGATGT
CATGGACGAGCTTGACTACTACCGGCTCCAGCAACACATCGAAG
Transcript length: 546
Transcript exons: 968316-968382,968419-968519,968613-968655,968934-969154,
974349-974462
GGCTTGTTCTAGCCTCCGTCGCCTTAGTTGCAGTGTGGATAATGGGGTTGGTTGCCACTGCAAT
TGAAAATTTCTTCACTGGACAGATGCAAGTGTGGACTCGTGAAGTTGGCCTTTCTGAAGAAGTG
GAGGAGCTTGAGACTGAGATGAGGAGCATGCAGATGGTGCTGGACGAGCTTGATTACTACCGGC
TCCAGCAACACATCGAAGGAGGGAAAGGTTCTACTGCTGCTTCTTGTACTAACCCTGAGGGAAG
TTATGTGTCTTCATCCACTCCATCTTACTTCCAACGAGTAAGCAACAGCATAAATCAAATATTA
GTTGGCCTATGCATGGAAAGAAAAGGAAAAGAGAGGAAGAAGAGGAGCAAACTCATAGCACCAT
GCTGCCTCTTGAGATTAAACATGATATTTCTAAGAGGATCAATGAAATGTGAAGTTGGCCTTTC
TGAAGAAGTGGAGCTTGAGACTGAGATGAGGAGCATGTATGACGCCGAGGATGTCATGGACGAG
CTTGACTACTACCGGCTCCAGCAACACATCGAAG
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	TCTGAAGAAGTGGAGCTTGAGACTGAGATGAGGAGCATGTATGACGCCGAGGATGTCATGGACG AGCTTGACTACTACCGGCTCCAGCAACACATCGAAGggcttgttctagcctccgtcgccttagt tgcagtgtggataatggggttggttgccactgcaattgaggctgcaataggatgggtggttgag agcatcct
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 386 Transcript exons: 968316-968384,968614-968655,968934-969094,974349-974462 GGCTTGTTCTAGCCTCCGTCGCCTTAGTTGCAGTGTGGATAATGGGGTTGGTTGCCACTGCAAT TGAGGGGACGAGCTTGATTACTACCGGCTCCAGCAACACATCGAAGGAGGGAAAGGTTCTACTG CTGCTTCTTGTACTAACCCTGAGGGAAGTTATGTGTCTTCATCCACTCCATCTTACTTCCAACG AGTAAGCAACAGCATAAATCAAATATTAGTTGGCCTATGCATGGAAAGAAAAGGAAAAGAGAGG AAGAAGAGGAGCAAACGTGAAGTTGGCCTTTCTGAAGAAGTGGAGCTTGAGACTGAGATGAGGA GCATGTATGACGCCGAGGATGTCATGGACGAGCTTGACTACTACCGGCTCCAGCAACACATCGA AG Transcript length: 411 Transcript exons: 968316-968396,968614-968655,968934-969094,974336-974462 GGCTTGTTCTAGCCTCCGTCGCCTTAGTTGCAGTGTGGATAATGGGGTTGGTTGCCACTGCAAT TGAGGCTGCAATAGGATGGACGAGCTTGATTACTACCGGCTCCAGCAACACATCGAAGGAGGGA AAGGTTCTACTGCTGCTTCTTGTACTAACCCTGAGGGAAGTTATGTGTCTTCATCCACTCCATC TTACTTCCAACGAGTAAGCAACAGCATAAATCAAATATTAGTTGGCCTATGCATGGAAAGAAAA GGAAAAGAGAGGAAGAAGAGGAGCAAACCAAGTGTGGACTCGTGAAGTTGGCCTTTCTGAAGAA GTGGAGCTTGAGACTGAGATGAGGAGCATGTATGACGCCGAGGATGTCATGGACGAGCTTGACT ACTACCGGCTCCAGCAACACATCGAAG Transcript length: 492 Transcript exons: 968316-968459,968615-968655,968934-969126,974349-974462 GGCTTGTTCTAGCCTCCGTCGCCTTAGTTGCAGTGTGGATAATGGGGTTGGTTGCCACTGCAAT TGAGGCTGCAATAGGATGGGTGGTTGAGAGCATCCTCGGAAATTTCTTCACTGGACAGATGCAA GTGTGGACTCGTGAAGGACGAGCTTGATTACTACCGGCTCCAGCAACACATCGAAGGAGGGAAA GGTTCTACTGCTGCTTCTTGTACTAACCCTGAGGGAAGTTATGTGTCTTCATCCACTCCATCTT ACTTCCAACGAGTAAGCAACAGCATAAATCAAATATTAGTTGGCCTATGCATGGAAAGAAAAGG AAAAGAGAGGAAGAAGAGGAGCAAACTCATAGCACCATGCTGCCTCTTGAGATTAAACGTGAAG TTGGCCTTTCTGAAGAAGTGGAGCTTGAGACTGAGATGAGGAGCATGTATGACGCCGAGGATGT CATGGACGAGCTTGACTACTACCGGCTCCAGCAACACATCGAAG Transcript length: 546 Transcript exons: 968316-968382,968419-968519,968613-968655,968934-969154, 974349-974462 GGCTTGTTCTAGCCTCCGTCGCCTTAGTTGCAGTGTGGATAATGGGGTTGGTTGCCACTGCAAT TGAAAATTTCTTCACTGGACAGATGCAAGTGTGGACTCGTGAAGTTGGCCTTTCTGAAGAAGTG GAGGAGCTTGAGACTGAGATGAGGAGCATGCAGATGGTGCTGGACGAGCTTGATTACTACCGGC TCCAGCAACACATCGAAGGAGGGAAAGGTTCTACTGCTGCTTCTTGTACTAACCCTGAGGGAAG TTATGTGTCTTCATCCACTCCATCTTACTTCCAACGAGTAAGCAACAGCATAAATCAAATATTA GTTGGCCTATGCATGGAAAGAAAAGGAAAAGAGAGGAAGAAGAGGAGCAAACTCATAGCACCAT GCTGCCTCTTGAGATTAAACATGATATTTCTAAGAGGATCAATGAAATGTGAAGTTGGCCTTTC TGAAGAAGTGGAGCTTGAGACTGAGATGAGGAGCATGTATGACGCCGAGGATGTCATGGACGAG CTTGACTACTACCGGCTCCAGCAACACATCGAAG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.248675004

Conservation Information
Conserved circRNAs	NA
PMCS	0.248675004

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os02g0118500_circ_ig.2

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