Plant Circular RNA Database

Detail information of Os02g0118400_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0118400_circ_g.1
					
						ID in PlantcircBase
						osa_circ_012776
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 962236-964034  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, PcircRNA_finder
					
						Parent gene
						
							Os02g0118400						
					
						Parent gene annotation
						
							Similar to CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6-
sialyltransferase (EC 2.4.99.1) (Beta-galactoside alpha-2,6-sial
yltransferase) (Alpha 2,6-ST) (Sialyltransferase 1) (ST6Gal I) (
B-cell antigen CD75). (Os02t0118400-01);Similar to CMP-N-acetyln
euraminate-beta-galactosamide-alpha-2,6-sialyltransferase (EC 2.
4.99.1) (Beta-galactoside alpha-2,6-sialyltransferase) (Alpha 2,
6-ST) (Sialyltransferase 1) (ST6Gal I) (B-cell antigen CD75). (O
s02t0118400-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0118400_circ_ag.1 Os02g0118400_circ_ag.2 Os02g0118400_circ_ag.3 Os02g0118400_circ_ag.4 Os02g0118400_circ_ag.5 Os02g0118500_circ_ig.1 Os02g0118500_circ_ig.2 Os02g0118500_circ_ig.3 Os02g0118500_circ_ig.4 Os02g0118500_circ_ig.5 Os02g0118500_circ_ig.6 EPlOSAG00000037336_circ_ig.1 						
					
						Support reads
						10
					
						Tissues
						seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0118400-01:6
Os02t0118400-02:6

General Information
CircRNA Name	Os02g0118400_circ_g.1
ID in PlantcircBase	osa_circ_012776
Alias	NA
Organism	Oryza sativa
Position	chr2: 962236-964034 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene	Os02g0118400
Parent gene annotation	Similar to CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6- sialyltransferase (EC 2.4.99.1) (Beta-galactoside alpha-2,6-sial yltransferase) (Alpha 2,6-ST) (Sialyltransferase 1) (ST6Gal I) ( B-cell antigen CD75). (Os02t0118400-01);Similar to CMP-N-acetyln euraminate-beta-galactosamide-alpha-2,6-sialyltransferase (EC 2. 4.99.1) (Beta-galactoside alpha-2,6-sialyltransferase) (Alpha 2, 6-ST) (Sialyltransferase 1) (ST6Gal I) (B-cell antigen CD75). (O s02t0118400-02)
Parent gene strand	+
Alternative splicing	Os02g0118400_circ_ag.1 Os02g0118400_circ_ag.2 Os02g0118400_circ_ag.3 Os02g0118400_circ_ag.4 Os02g0118400_circ_ag.5 Os02g0118500_circ_ig.1 Os02g0118500_circ_ig.2 Os02g0118500_circ_ig.3 Os02g0118500_circ_ig.4 Os02g0118500_circ_ig.5 Os02g0118500_circ_ig.6 EPlOSAG00000037336_circ_ig.1
Support reads	10
Tissues	seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0118400-01:6 Os02t0118400-02:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAGATACTAAGGCATGCTAATTTTTATGGTTGCAGAAACAAAAAAGGAAGCCCTTATCGTTAAG
ACAACAATACATGATATCATGAACCAAATGATCCGGgatgcaaatggtctagggctgaaagcaa
ttccaggagaggattactgtcgagttgtaatacagtatccaagcgacacagattctaagtgggt
aagtgcac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GATGCAAATGGTCTAGGGCTGAAAGCAATTCCAGGAGAGGATTACTGTCGAGTTGTAATACAGT
ATCCAAGCGACACAGATTCTAAGTGGGTAAGTGCACATGTGCTGTGTAATTTCCTTCTGGATGC
AGGCCTTCCCATTTCAAATGTAGTCAGCTCCTGACATAGTTTGCAAAGCCTCTTTTAATTCTTG
CTCTGTACTTACATCGCATCCTACCTTATGCTTCTGAAAATTGCCACTAGCGTGAACAGTACTC
ATTGCATACTCGTGCCACCTTTTGTGATGCGTAGGGATGGCAATGGGTCGGGTCGGGCATGGGT
AGAGCAAAACCATGCCTGACCCGATGCCCGACATTGCCAGCCCAAACCCTACCCACTAGAGGTA
GCGGGCAAAACTCCGTGCCCGGCGGGCGCGGGTATATCTGGCGGGTACCCAATGAATCTCACAT
GAATAATAACTTGAAAGATATGTAATTTAACAAAGAGAAATAAAATCAATAATTTACCAAATTA
TCGGTTATCAACAATAATTTGAATTACATCATAACTTAGTATCAATTAGCATCACAAATGAACC
GAGAGAAATGGTATAAGAATTAAGAAATGAGTCAAAATTAGCTAATACATATGTATCGGATTGG
GCATGGTTTACCCACGGGTAAAAAATGAAACCCACCTATTACCCATAACGTCTTCGGGTCTCGG
GCGGGCGTGCCCATGGGTAAAAAGTCACACCCACGCCCGTACCCATCGGGTCGGGTATCCACGG
ATACCTGGACCCATGGGTAAAATTCCCATCCCTAGTGATGCGTGTGTTTGTTTTTCTTAGTTCT
TATGCACTGATATTTGCAGAAAGATCCAAAAACTGGAGAACCTGAAGGTTTATCATTTGAGTTC
AATCTCTGTGAAGCTGTGGCTTCATGGGAGCAGGTTAGCATTCATTCAACTGACATATGTATGT
GTTTTTTTGCAGATGCATTGAAGTTTAATATTATATGATATAATGTAAAACATGGCAATCCTCA
GTATGTAAACACTGTGTCCAGATATTTGTTAGATCACAGTATTAGCTATTTTTATGGACTTATG
GTCACTCAGTTGCTTTTTTCCTAGGTTCGCAATAGCACAACAATACTTACAAAGGAGTACATCG
ATGCGTTGCCAAATGGTTGGGAGGAGTATGCATGGCGCAGGATCAATAAAGGAATCCATCTGTG
GGTACACATACTTGCAGTTTCATCAAGATTTGCAGCATGATTAACTCCACAAACAGATTATTGA
GCATGTTTAGTCTTGAAATTGCAGGAACAAGTGCCAGAACAGGACTCTTTGCATGGAAAAACTT
TCATTAGTTCTTCCTGAGACACCACCATATGTACCTCGGCAATTTGGTAGATGTGCTGTAGTTG
GAAACTCTGGGGATCTTCTTAAAACCAAATTTGGGGATGAAATTGATTCTTATGATGTCGTTAT
TAGAGAGAACGGTGCACCCATCCAGGTTTCTTTAAGATACTTATGTTTGCTGCTCTTGTGTCGT
TCCACTCGAACATAAACTGACTTCTATTTTTATTGAAGAATTATACAGAATATGTTGGGACAAA
GAGTACATTTCGACTTCTTAACAGAGGATCTGCAAAGGCTCTAGATAAAGTTGTTGAGTTAGAT
GGTAGGTCTGTCAGCCACCTATTTTCCCATTTGGTGAGATACTAAGGCATGCTAATTTTTATGG
TTGCAGAAACAAAAAAGGAAGCCCTTATCGTTAAGACAACAATACATGATATCATGAACCAAAT
GATCCGG
						
					

			
		

Sequences
Splice junction sequence	GAGATACTAAGGCATGCTAATTTTTATGGTTGCAGAAACAAAAAAGGAAGCCCTTATCGTTAAG ACAACAATACATGATATCATGAACCAAATGATCCGGgatgcaaatggtctagggctgaaagcaa ttccaggagaggattactgtcgagttgtaatacagtatccaagcgacacagattctaagtgggt aagtgcac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GATGCAAATGGTCTAGGGCTGAAAGCAATTCCAGGAGAGGATTACTGTCGAGTTGTAATACAGT ATCCAAGCGACACAGATTCTAAGTGGGTAAGTGCACATGTGCTGTGTAATTTCCTTCTGGATGC AGGCCTTCCCATTTCAAATGTAGTCAGCTCCTGACATAGTTTGCAAAGCCTCTTTTAATTCTTG CTCTGTACTTACATCGCATCCTACCTTATGCTTCTGAAAATTGCCACTAGCGTGAACAGTACTC ATTGCATACTCGTGCCACCTTTTGTGATGCGTAGGGATGGCAATGGGTCGGGTCGGGCATGGGT AGAGCAAAACCATGCCTGACCCGATGCCCGACATTGCCAGCCCAAACCCTACCCACTAGAGGTA GCGGGCAAAACTCCGTGCCCGGCGGGCGCGGGTATATCTGGCGGGTACCCAATGAATCTCACAT GAATAATAACTTGAAAGATATGTAATTTAACAAAGAGAAATAAAATCAATAATTTACCAAATTA TCGGTTATCAACAATAATTTGAATTACATCATAACTTAGTATCAATTAGCATCACAAATGAACC GAGAGAAATGGTATAAGAATTAAGAAATGAGTCAAAATTAGCTAATACATATGTATCGGATTGG GCATGGTTTACCCACGGGTAAAAAATGAAACCCACCTATTACCCATAACGTCTTCGGGTCTCGG GCGGGCGTGCCCATGGGTAAAAAGTCACACCCACGCCCGTACCCATCGGGTCGGGTATCCACGG ATACCTGGACCCATGGGTAAAATTCCCATCCCTAGTGATGCGTGTGTTTGTTTTTCTTAGTTCT TATGCACTGATATTTGCAGAAAGATCCAAAAACTGGAGAACCTGAAGGTTTATCATTTGAGTTC AATCTCTGTGAAGCTGTGGCTTCATGGGAGCAGGTTAGCATTCATTCAACTGACATATGTATGT GTTTTTTTGCAGATGCATTGAAGTTTAATATTATATGATATAATGTAAAACATGGCAATCCTCA GTATGTAAACACTGTGTCCAGATATTTGTTAGATCACAGTATTAGCTATTTTTATGGACTTATG GTCACTCAGTTGCTTTTTTCCTAGGTTCGCAATAGCACAACAATACTTACAAAGGAGTACATCG ATGCGTTGCCAAATGGTTGGGAGGAGTATGCATGGCGCAGGATCAATAAAGGAATCCATCTGTG GGTACACATACTTGCAGTTTCATCAAGATTTGCAGCATGATTAACTCCACAAACAGATTATTGA GCATGTTTAGTCTTGAAATTGCAGGAACAAGTGCCAGAACAGGACTCTTTGCATGGAAAAACTT TCATTAGTTCTTCCTGAGACACCACCATATGTACCTCGGCAATTTGGTAGATGTGCTGTAGTTG GAAACTCTGGGGATCTTCTTAAAACCAAATTTGGGGATGAAATTGATTCTTATGATGTCGTTAT TAGAGAGAACGGTGCACCCATCCAGGTTTCTTTAAGATACTTATGTTTGCTGCTCTTGTGTCGT TCCACTCGAACATAAACTGACTTCTATTTTTATTGAAGAATTATACAGAATATGTTGGGACAAA GAGTACATTTCGACTTCTTAACAGAGGATCTGCAAAGGCTCTAGATAAAGTTGTTGAGTTAGAT GGTAGGTCTGTCAGCCACCTATTTTCCCATTTGGTGAGATACTAAGGCATGCTAATTTTTATGG TTGCAGAAACAAAAAAGGAAGCCCTTATCGTTAAGACAACAATACATGATATCATGAACCAAAT GATCCGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.179917111

Conservation Information
Conserved circRNAs	NA
PMCS	0.179917111

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							963569-964031(+)
						
						Potential amino acid sequence
						
							MEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIRENGAPIQNYTEYVGTK
STFRLLNRGSAKALDKVVELDETKKEALIVKTTIHDIMNQMIRDANGLGLKAIPGEDYCRVVIQ
YPSDTDSKWKDPKTGEPEGLSFEFNLCEAVASWEQVRNSTTILTKEYIDALPNGWEEYAWRRIN
KGIHLNKCQNRTLCMEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIREN
GAPIQNYTEYVGTKSTFRLLNRGSAKALDKVVELDETKKEALIVKTTIHDIMNQMIRDANGLGL
KAIPGEDYCRVVIQYPSDTDSKWKDPKTGEPEGLSFEFNLCEAVASWEQVRNSTTILTKEYIDA
LPNGWEEYAWRRINKGIHLNKCQNRTLCMEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKF
GDEIDSYDVVIRENGAPIQNYTEYVGTKSTFRLLNRGSAKALDKVVELDETKKEALIVKTTIHD
IMNQMIRDANGLGLKAIPGEDYCRVVIQYPSDTDSKWKDPKTGEPEGLSFEFNLCEAVASWEQV
RNSTTILTKEYIDALPNGWEEYAWRRINKGIHLNKCQNRTLCMEKLSLVLPETPPYVPRQFGRC
AVVGNSGDLLKTKFGDEIDSYDVVIRENGAPIQNYTEYVGTKSTFRLLNRGSAKALDKVVELDE
TKKEALIVKTTIHDIMNQMIR(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	963569-964031(+)
Potential amino acid sequence	MEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIRENGAPIQNYTEYVGTK STFRLLNRGSAKALDKVVELDETKKEALIVKTTIHDIMNQMIRDANGLGLKAIPGEDYCRVVIQ YPSDTDSKWKDPKTGEPEGLSFEFNLCEAVASWEQVRNSTTILTKEYIDALPNGWEEYAWRRIN KGIHLNKCQNRTLCMEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIREN GAPIQNYTEYVGTKSTFRLLNRGSAKALDKVVELDETKKEALIVKTTIHDIMNQMIRDANGLGL KAIPGEDYCRVVIQYPSDTDSKWKDPKTGEPEGLSFEFNLCEAVASWEQVRNSTTILTKEYIDA LPNGWEEYAWRRINKGIHLNKCQNRTLCMEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKF GDEIDSYDVVIRENGAPIQNYTEYVGTKSTFRLLNRGSAKALDKVVELDETKKEALIVKTTIHD IMNQMIRDANGLGLKAIPGEDYCRVVIQYPSDTDSKWKDPKTGEPEGLSFEFNLCEAVASWEQV RNSTTILTKEYIDALPNGWEEYAWRRINKGIHLNKCQNRTLCMEKLSLVLPETPPYVPRQFGRC AVVGNSGDLLKTKFGDEIDSYDVVIRENGAPIQNYTEYVGTKSTFRLLNRGSAKALDKVVELDE TKKEALIVKTTIHDIMNQMIR(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0118400_circ_g.1

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