Detail information of AT2G03710_circ_g.2


General Information
CircRNA Name AT2G03710_circ_g.2
ID in PlantcircBase ath_circ_012700
Alias 2:1130725-1130957
Organism Arabidpsis thaliana
Position chr2: 1130725-1130957  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03710
Parent gene annotation Agamous-like MADS-box protein AGL3
Parent gene strand +
Alternative splicing AT2G03710_circ_g.1
Support reads 2
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03710.1:2
AT2G03710.3:2
AT2G03710.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATTTGCTAGGTGAAGAGCTATCCGAGATGGATGTGAATGAGCTTGAGCATCTCGAACGCCAA
GTAGATGCATCACTAAGACAAATAAGATCTACCAAGgataagtatcaagactacttgaagctta
aatcaagagttgagatccttcaacattcacaaaggtacttatatatcctagtccatctaaatgt
aactatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATAAGTATCAAGACTACTTGAAGCTTAAATCAAGAGTTGAGATCCTTCAACATTCACAAAGGT
ACTTATATATCCTAGTCCATCTAAATGTAACTATATATGCTCTTGTTACTAAATGTTTCTTCTT
TTTAGGCATTTGCTAGGTGAAGAGCTATCCGAGATGGATGTGAATGAGCTTGAGCATCTCGAAC
GCCAAGTAGATGCATCACTAAGACAAATAAGATCTACCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.213948534
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020