Detail information of AT2G03710_circ_g.1


General Information
CircRNA Name AT2G03710_circ_g.1
ID in PlantcircBase ath_circ_012699
Alias 2:1130575-1131079
Organism Arabidpsis thaliana
Position chr2: 1130575-1131079  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03710
Parent gene annotation Agamous-like MADS-box protein AGL3
Parent gene strand +
Alternative splicing AT2G03710_circ_g.2
Support reads 1/1
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03710.2:4
AT2G03710.1:4
AT2G03710.3:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGACAAATTTTGTTTCGAATCTTTCATCCTAAATCGTTGTTTCGTTTTCATTGCCAGGCTCGG
TCTATGCTTGATCAACTATCTGACCTCAAAACTAAGtggtatggcgaggacggttgataagtat
agaaaacatagttatgcaacaatggatccaaatcaatcagctaaagacttgcaggtacatatct
tctctttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGTATGGCGAGGACGGTTGATAAGTATAGAAAACATAGTTATGCAACAATGGATCCAAATCAA
TCAGCTAAAGACTTGCAGGTACATATCTTCTCTTTCAATCAAAGACTGACCTCAAAGTTGTCCT
TAATTTTATTTTAAATTGGCAGGATAAGTATCAAGACTACTTGAAGCTTAAATCAAGAGTTGAG
ATCCTTCAACATTCACAAAGGTACTTATATATCCTAGTCCATCTAAATGTAACTATATATGCTC
TTGTTACTAAATGTTTCTTCTTTTTAGGCATTTGCTAGGTGAAGAGCTATCCGAGATGGATGTG
AATGAGCTTGAGCATCTCGAACGCCAAGTAGATGCATCACTAAGACAAATAAGATCTACCAAGG
TATATTTCTAAGCTTACAAAATCGACAAATTTTGTTTCGAATCTTTCATCCTAAATCGTTGTTT
CGTTTTCATTGCCAGGCTCGGTCTATGCTTGATCAACTATCTGACCTCAAAACTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.186195413
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020