Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d048336_circ_g.1 |
ID in PlantcircBase | zma_circ_010099 |
Alias | zma_circ_0003129 |
Organism | Zea mays |
Position | chr9: 154663152-154666505 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d048336 |
Parent gene annotation |
Serine/threonine-protein phosphatase |
Parent gene strand | + |
Alternative splicing | Zm00001d048336_circ_g.2 Zm00001d048336_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d048336_T006:3 Zm00001d048336_T001:2 Zm00001d048336_T008:5 Zm00001d048336_T002:6 Zm00001d048336_T010:2 Zm00001d048336_T005:4 Zm00001d048336_T007:6 Zm00001d048336_T003:6 Zm00001d048336_T009:3 Zm00001d048336_T004:6 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.115903563 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
154663153-154666502(+) 154666310-154663155(+) |
Potential amino acid sequence |
MLVALKVRYPHRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALLVFS QHHGIVCASMYSTDTAFIFFFKVESEIFCLHGGLSPSIENLDSVRSLDRVQEVPHEGPMCDLLW SDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPN YCYRCGNMASILEVDDCNSHTFIQMLVALKVRYPHRITILRGNHESRQITQVYGFYDECLRKYG NANVWKTFTDLFDYFPLTALLVFSQHHGIVCASMYSTDTAFIFFFKVESEIFCLHGGLSPSIEN LDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLVARA HQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCNSHTFIQMLVALKVRYPHRITIL RGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALLVFSQHHGIVCASMYSTDTA FIFFFKVESEIFCLHGGLSPSIENLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGA GYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDD CNSHTFIQMLVALKVRYPHRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFP LTALLVFSQHHGIVCASMYSTDTAFIFFFKVESEIFCLHGGLSPSIENLDSVRSLDRVQEVPHE GPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKV VTIFSAPNYCYRCGNMASILEVDDCNSHTFIQ(+) MSKRLSPYSVLQITAIDAAIWHPFWKLTTATATHSSRC*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |