Detail information of Zm00001d048336_circ_g.1


General Information
CircRNA Name Zm00001d048336_circ_g.1
ID in PlantcircBase zma_circ_010099
Alias zma_circ_0003129
Organism Zea mays
Position chr9: 154663152-154666505  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d048336
Parent gene annotation Serine/threonine-protein phosphatase
Parent gene strand +
Alternative splicing Zm00001d048336_circ_g.2 Zm00001d048336_circ_g.3
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d048336_T006:3
Zm00001d048336_T001:2
Zm00001d048336_T008:5
Zm00001d048336_T002:6
Zm00001d048336_T010:2
Zm00001d048336_T005:4
Zm00001d048336_T007:6
Zm00001d048336_T003:6
Zm00001d048336_T009:3
Zm00001d048336_T004:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTGTCACCATATTCAGTGCTCCAAATTACTGCTATCGATGCGGCAATATGGCATCCATTTTG
GAAGTTGACGACTGCAACAGCCACACATTCATCCAGatgctagtagcactaaaagtgaggtatc
cacatcgaattacaatccttcgtggaaaccacgagagtcggcaggtacaatcaaatattatttt
cttgatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGCTAGTAGCACTAAAAGTGAGGTATCCACATCGAATTACAATCCTTCGTGGAAACCACGAGA
GTCGGCAGGTACAATCAAATATTATTTTCTTGATGCTTATGACATGTCACTTTTTAGTTACTGT
TACCAGGATTTTATCGAGATCAGAGAAAATTACTCTAGTTGTTTATGCGTGAATATTATTTTCC
TGTTCAGAATTTGCTTTGTTACAATTTAGATGCCATCATCATATTGGTTTCCTGTTCAGAATTT
GCTTTGCTTATAATTTAGATGGCATCCCTATTAATCATCATTTCTTGTGTGCTTTCTGGTTCAA
ACTGAAACTCTTATTTTATGGTCGCAGATCACACAGGTGTATGGATTCTACGACGAATGCCTAC
GAAAGTGAGTTTGTTTAGGTGCTTAAAGTTCAAGTTACATTTCTAGGCGTAGCATGTTCCTACA
TAGCACATACTGTATCATTACCTGTGTGAGAAGATCTACGTTTAATCTTTTTTCTTAATCACAG
TTGTATGTTAGCTTCAGATTTAGATTAGTATAGTCATCCCAATTTTTCTCACACATGCAATTCT
CTTTGGCATATGCCTTTTCTGTTACTTCTTTTTTGTTGTGTATAGCTTTCGTTAGATCTTATGT
GGTGGGCTTTGGACAAACATAAAGTTTCAACGAAGTATGTTGGACTCATTAATGATATGTACAA
CAATGTTGTGAATAGTGATCGAAGAACAAGTGACGAAGACACATGTTACTCCCCGATTAGAATA
TTACTACATCAAGGGTCAACTTTGAGCCCTTGTATTTTTGCCTTGGTGATGGATGAGGTCACAA
GAGACATACAAAGGGAGATTGGTGTATATTTTTTTGTGAACGATGTAGTACTGGCTGTTGAAAG
CTGGGCAGAGTTGTGGCGGGAGACTCTAGACTTTAAAGGTTTTAGACTCAGTAGAACTAAAACC
AAATATATGAGGTGTAACTTCGGCACTACTATACATGAGAAAGGAAATGTTAGTTGGAAGGTCA
TGTAGTGTCTAGGAAGGATACCTTTGGTATTTGGGATCAATGCTACAAAGAGACTGGGATATTG
ATGAAGATGTTAGGCTGTTAGCCATAGAATCAAAGCATTTGAAAGATGTTAGACTGGGATGAAG
TGGCATCAAGCATTTGAAATTCTAGGTGACCAAAGGGTACTGCAAAAGCTAAAAAGACAAGTTT
TATAGGACGACGATTAGATCTGCTATGTTGTATGGTGCATAAAGTTGGCCTACAATAGATGAGA
TGTACAACAGATAAGTGTTGTGGACATGTGTATGTTGCATTGGATTTGTGGCCATACAAGAATG
GATCGAATCCGGAACGATGATATACGTGATGGGATATGGGTAACACCAATTGAAAAAAGCTTGT
CCAACACAGATGAAGATGGTTTGGACATGTCCAATAGAAATCTCTAAAGGCACCAGTGCGTAGT
GGGACCCTTAGGTGCCATAGTAATGGAAAGAGAGGCAGGGTAAGACCGAAGTTGACATGGAAAG
AGATAATAAAAGGAGACTTGAAAGGATGGAATATACCAAAGATTTAGCCTTGAGTATGAGTGCA
TGGAAAACACTTATCCACGTGAATAACCCTTGACTTGTGGCGCTGTTGGGTTCCAACTCTAGTC
TACCCCAACTTGCTTGGCACTAAAAGGTTTTGTTGTTATTGTTGATGATGATGTTAGTGCACCA
TCACTAGGAGCTGGTGTGAAAGTTGAATGATCATATTTTTTGTTATCTTATATAAACTCATTGG
TTCGTGTAAGTTGATTGTAAGAATGTTTTTTCCCACAGGTCCACAATATAATCCTAGCTTGTCA
ATTTTGTTGCTAACTGTTTTGTTTTAAACCAGGTATGGCAATGCAAATGTATGGAAGACATTTA
CGGATCTTTTTGATTATTTTCCTCTGACAGCTCTGGTGTGTACTCTTAAAACTGGAATCACCTT
TTGTCGGTTGTATCTGGAGCGCCTTTCTATGCACCATCTTCTCAATAAGCAGCATGCAAATCTT
AAAACACTAAAATGGCATAATAGCTAGAACCACAAATAGCTTAGGCCCCCATTGGAATGCGAGA
ATTTTTCTTGTTTCCTGTGTTTTTCCTGTGAAAATGAATTGATTCCTGTGAAATTCCTGCATTC
CAAAGGGGGCCTTAGTAGATAGAGTTTGATCGTTCTTTTTTAGCTTCACCAATTTCAGATTCTT
CAGGCGGCAATATATTTATGGGTTATGACCAACTTCTTTTTAACCCATTAGAGCATGTTAGAAA
CTGAGAACCAGAGTCTATTCTGTATTCAAATGTTCCAATTATTTGGAACACTCTGTTGAACATC
AATTGTCTTCATTTGTTTGTCAATTCCAGCAGCTGTAGAATCAAATGGTTGTGATATGGTGGTA
ACTGTACTGTGCTATGTTGCTTCTCACTTTGGTTTTTATACTTGCTGTGTTGTTTACTCTTGGT
TGAAGAGCCAGTAATCTATGTTGTGCTGTGGCTGACTGTTCTATGGAACATAGGCTGGCAAATG
GTGATGTTGTGGTTTTTCTCCGTCGCGAATGTTGCCCTCTTTGTAAATCTTTACTTATCAAATT
GTATGAATTAATTGTTCAAATATTTGAAATGATAAATCCTTATCGTGCATTTAAATAATTTTGT
TGTTTGTTCTGTCTCTACCTATACCTTGAAGCTTGTGTTTTCTCAACATCATGGAATTGTCTGT
GCATCCATGTACTCTACTGATACAGCATTTATCTTCTTCTTTAAGGTGGAATCTGAGATTTTCT
GCCTTCATGGTGGTCTATCTCCATCAATTGAAAATCTTGATAGTGTGCGCAGCTTAGATCGAGT
CCAAGAGGTTCCCCATGAGGGACCTATGTGCGATCTCTTATGGTCAGATCCAGACGACCGATGT
GGTTGGGGCATCTCCCCTCGCGGTGCTGGCTACACTTTCGGGCAGGTACTACACATCTGTTTTC
ATGTTACCTCTTGTATACCTTTTTAGTTTGAAGTTATTCATTTGTTCCTTTGTTTCTCCAGGAC
ATATCAGAGCAGTTTAATCACACAAACAATCTCAAACTCGTAGCTCGGGCTCATCAATTAGTTA
TGGAGGGATATAACTGGGCTCATGTAAGCCGATTTGACTTTTAGACGCTTATGGAGCTGAGCTT
TGAGTGAAGCAATCTTTCTGATCATGCACGATGCATGTATTTACAGGAGCAAAAGGTTGTCACC
ATATTCAGTGCTCCAAATTACTGCTATCGATGCGGCAATATGGCATCCATTTTGGAAGTTGACG
ACTGCAACAGCCACACATTCATCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.115903563
Functional Information
Coding potential Y
Potential coding position 154663153-154666502(+)
154666310-154663155(+)
Potential amino acid sequence MLVALKVRYPHRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALLVFS
QHHGIVCASMYSTDTAFIFFFKVESEIFCLHGGLSPSIENLDSVRSLDRVQEVPHEGPMCDLLW
SDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPN
YCYRCGNMASILEVDDCNSHTFIQMLVALKVRYPHRITILRGNHESRQITQVYGFYDECLRKYG
NANVWKTFTDLFDYFPLTALLVFSQHHGIVCASMYSTDTAFIFFFKVESEIFCLHGGLSPSIEN
LDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLVARA
HQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCNSHTFIQMLVALKVRYPHRITIL
RGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALLVFSQHHGIVCASMYSTDTA
FIFFFKVESEIFCLHGGLSPSIENLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGA
GYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDD
CNSHTFIQMLVALKVRYPHRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFP
LTALLVFSQHHGIVCASMYSTDTAFIFFFKVESEIFCLHGGLSPSIENLDSVRSLDRVQEVPHE
GPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKV
VTIFSAPNYCYRCGNMASILEVDDCNSHTFIQ(+)
MSKRLSPYSVLQITAIDAAIWHPFWKLTTATATHSSRC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b