Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d048336_circ_g.1 |
| ID in PlantcircBase | zma_circ_010099 |
| Alias | zma_circ_0003129 |
| Organism | Zea mays |
| Position | chr9: 154663152-154666505 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d048336 |
| Parent gene annotation |
Serine/threonine-protein phosphatase |
| Parent gene strand | + |
| Alternative splicing | Zm00001d048336_circ_g.2 Zm00001d048336_circ_g.3 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d048336_T006:3 Zm00001d048336_T001:2 Zm00001d048336_T008:5 Zm00001d048336_T002:6 Zm00001d048336_T010:2 Zm00001d048336_T005:4 Zm00001d048336_T007:6 Zm00001d048336_T003:6 Zm00001d048336_T009:3 Zm00001d048336_T004:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.115903563 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
154663153-154666502(+) 154666310-154663155(+) |
| Potential amino acid sequence |
MLVALKVRYPHRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALLVFS QHHGIVCASMYSTDTAFIFFFKVESEIFCLHGGLSPSIENLDSVRSLDRVQEVPHEGPMCDLLW SDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPN YCYRCGNMASILEVDDCNSHTFIQMLVALKVRYPHRITILRGNHESRQITQVYGFYDECLRKYG NANVWKTFTDLFDYFPLTALLVFSQHHGIVCASMYSTDTAFIFFFKVESEIFCLHGGLSPSIEN LDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLVARA HQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCNSHTFIQMLVALKVRYPHRITIL RGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALLVFSQHHGIVCASMYSTDTA FIFFFKVESEIFCLHGGLSPSIENLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGA GYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDD CNSHTFIQMLVALKVRYPHRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFP LTALLVFSQHHGIVCASMYSTDTAFIFFFKVESEIFCLHGGLSPSIENLDSVRSLDRVQEVPHE GPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKV VTIFSAPNYCYRCGNMASILEVDDCNSHTFIQ(+) MSKRLSPYSVLQITAIDAAIWHPFWKLTTATATHSSRC*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |