Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d048336_circ_g.2 |
ID in PlantcircBase | zma_circ_003055 |
Alias | circ1919 |
Organism | Zea mays |
Position | chr9: 154665948-154666505 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d048336 |
Parent gene annotation |
Serine/threonine-protein phosphatase |
Parent gene strand | + |
Alternative splicing | Zm00001d048336_circ_g.1 Zm00001d048336_circ_g.3 |
Support reads | 4 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-AA |
Number of exons covered | Zm00001d048336_T005:3 Zm00001d048336_T003:3 Zm00001d048336_T002:3 Zm00001d048336_T007:3 Zm00001d048336_T006:3 Zm00001d048336_T004:3 Zm00001d048336_T009:3 Zm00001d048336_T001:2 Zm00001d048336_T010:2 Zm00001d048336_T008:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.148422506 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |