Detail information of Os10g0510700_circ_g.2


General Information
CircRNA Name Os10g0510700_circ_g.2
ID in PlantcircBase osa_circ_007640
Alias NA
Organism Oryza sativa
Position chr10: 19641665-19644024  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0510700
Parent gene annotation Similar to calcium dependent protein kinase1. (Os10t0510700-00)
Parent gene strand -
Alternative splicing Os10g0510700_circ_g.1 Os10g0510700_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0510700-00:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACATGCATCATAAAATTTGACAAGATTCGAATGCCCAGATAAAGCCTTCAGAATTTTCACCTC
TCTACGCACATCCTCAATTGATATTGCTGTTGTCATcatcctgaagttttcaatgcatagtcga
ccatctgtactacttggttctagcaagttgtactgtgctctgatgtagataagctcatcttctg
ttattgct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 879
Transcript exons: 19641665-19641775,19642077-19642186,19642301-19642597,19
642783-19642861,19642962-19643070,19643151-19643192,1964
3894-19644024
CATCCTGAAGTTTTCAATGCATAGTCGACCATCTGTACTACTTGGTTCTAGCAAGTTGTACTGT
GCTCTGATGTAGATAAGCTCATCTTCTGTTATTGCTCTGGACAGAGCCTTCAATGCCGCTCGCT
TGAAAGGTGTAGAGCGAAGATATGCCTTAATCAACTTAAAAACTAGCATATCCAAAGGGATCGG
TCGGCACTCATCTCGCAACCAGGGGTGAGAGAGTGCCTGGGCAGCAGTCATTCTTTTTCTGTAA
TCCTTGTTAAGAAGTCTTTTGACAAAATCTTTGGCTTCAGGAGATATTGAAGACCACGGTGCAT
CATCAAAATTAGGATCAGCTCTCAGCACTGAGCGGAAAATGCCTGATTCAGTTCGTGCCCAGAA
TGGTCTGCTACCGCACAGCAAGATATAAGTGATAACACCAATACTCCACATGTCTGCTTCCGTG
CTATATGACCTATGTAGGACTTCTGGAGCAACATAGTATGCACTACCAACAATATCATTTAATC
TTTCATCTGGCCGTATAAAATCAGAAAGTCCAAAGTCGATGATCTTCATAGGTGAATGGTCATC
TCTAGTGCTGAATAGGAAATTCTCTGGCTTCAAATCACGGTGAACAACGCCTTGAAGATGGCAG
AAAGAAACAACATTTAATATTTGTTCAACGATAACTTTAGCATCTTCCTCAGTGTATCTCCCAC
CTCTGGACAAAATTCTGTCCAATAACTCCCCACCTTCACATAACTCCATGATTATGTAGACATT
AAGGGCATCCTCACATGCATCATAAAATTTGACAAGATTCGAATGCCCAGATAAAGCCTTCAGA
ATTTTCACCTCTCTACGCACATCCTCAATTGATATTGCTGTTGTCAT

Genomic sequence CATCCTGAAGTTTTCAATGCATAGTCGACCATCTGTACTACTTGGTTCTAGCAAGTTGTACTGT
GCTCTGATGTAGATAAGCTCATCTTCTGTTATTGCTCTGGACAGAGCCTGTTGCATTGAAAAGG
GAAAATAAAAGGATTAGTATATTAAACCTAGAAAACTATTTTATGCATACAAGAAACTAGATTC
CACCTCCCTGTATCAAGTATATTAAACCTAGAAAACTATTTTATGCAAGGTGGGACTACATGGT
GTATAGTTACATGTACATGCAACCACAGGTGTGTTGTGCTATCTGAAAATCAAGAAAAAAGCTG
GAAGTTTCATAGCATTGGTATCAGAGGAGGTATATGATGAAGTACTGCAGTGACACTGCATGCT
ACAGAAATTACAAGGATGAAATCAAAACCTTCAATGCCGCTCGCTTGAAAGGTGTAGAGCGAAG
ATATGCCTTAATCAACTTAAAAACTAGCATATCCAAAGGGATCGGTCGGCACTCATCTCGCAAC
CAGGGGTGAGCTACAGAAAAACAGATAATACATAAGAAAACTACTAACATTGTTCTGAAACTAA
AAAGAAATGTTATCTGTAACTGATGTAGAGAAACTAAGGAAAATCACTGGGACTACTCACAGAG
TGCCTGGGCAGCAGTCATTCTTTTTCTGTAATCCTTGTTAAGAAGTCTTTTGACAAAATCTTTG
GCTTCAGGAGATATTGAAGACCACGGTGCATCATCAAAATTAGGATCAGCTCTCAGCACTGAGC
GGAAAATGCCTGATTCAGTTCGTGCCCAGAATGGTCTGCTACCGCACAGCAAGATATAAGTGAT
AACACCAATACTCCACATGTCTGCTTCCGTGCTATATGACCTATGTAGGACTTCTGGAGCAACA
TAGTATGCACTACCAACAATATCATTTAATCTTTCATCTGTAAAAGAAGGCATTGACCAATCAT
AAATATGTGTGTCATCAAAACACTTGAGTATTTTCACTATTTGGTTTCAAAAAACAGTATTTTC
ACCATGTCAGGACAAATTCATAATAGAGTAAAAAAAAAACATAAGATGAAACACAAGTTCTTTG
GAAGGGCATAATTCTTTTGGGGGGAAATACCTGGCCGTATAAAATCAGAAAGTCCAAAGTCGAT
GATCTTCATAGGTGAATGGTCATCTCTAGTGCTGAATAGGAAATTCTGATAGGATCAAGGGTAG
AATTATTAGAAGGGATATATCAAAAATATTTGTAACAAGATAAACACAATTCAGTTTATGTACT
AAACAGAGAAGACAGACCTCTGGCTTCAAATCACGGTGAACAACGCCTTGAAGATGGCAGAAAG
AAACAACATTTAATATTTGTTCAACGATAACTTTAGCATCTTCCTCAGTGTATCTCCCACCTCT
AAAAAGGGCAAGCGACACTGTATTAGCGAAATACTTGTTTTGGTTTGCAGAAAATGTTTCTCAA
GAAAAATACAATACCTGGACAAAATTCTGTCCAATAACTCCCCACCTTCACATAACCTGGTCAA
TAACAGACGAATAAAATATGAATCACCATGCAACTTTACGAGGAAGAATAGGCTACTTGTAACC
AGACAGCAAGCCCATTTTTGCTGAACTTTTAGATGATGGAAGTAAACATCAGCTCTACTTGTAA
TGCTCTTGATCATATGTACACATTATGTGCTAGAAAAATGGCATAGGGAATATCCGCAGGTTCA
ACAAAGATCAAACGGTAAAGTCTATTTTGGCCTTTGAATTGTTCTTGAAGTCTAATTTTCACTG
CAAACTCACAACCTGCATATTTTTCACCCACCAACTTCCACAACTGGACAAATAACAATCTGAA
CCCATTCGACAATGATTTTTTTATCACATTGTAGTGGCATTCGCTTGTGTAAACTGTAAACTCC
TGTTATGATTGTTTTGCTTATATGGGTCCTATTTAGTTAGGTCCGCATAAAAAAAAACTTACTT
AATAGGAGATTAGGAGTTTGTGCCAGTAAAACTACCATCTGAATCAAAAAAAAAATCACTGGAA
TAGGGTTGGGGTTTTATTTCTAGTTTTCATAGTTCGGGGTGAGATATAATCATTTTTTTTTGGT
TCAGCGTGAAAAGGTGGACTTCAAGAAGAATTTGAGAGCAACTTTACAAAGATCAAAACAATCA
ACTATGTAAGGATGGAAAGTCAACAATATCTTAAGGAAAGAAAAGAAACGTACTCCATGATTAT
GTAGACATTAAGGGCATCCTCACATGCATCATAAAATTTGACAAGATTCGAATGCCCAGATAAA
GCCTTCAGAATTTTCACCTCTCTACGCACATCCTCAATTGATATTGCTGTTGTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.273903302
Functional Information
Coding potential Y
Potential coding position 19644026-19641667(-)
Potential amino acid sequence MTTAISIEDVRREVKILKALSGHSNLVKFYDACEDALNVYIIMELCEGGELLDRILSRGGRYTE
EDAKVIVEQILNVVSFCHLQGVVHRDLKPENFLFSTRDDHSPMKIIDFGLSDFIRPDERLNDIV
GSAYYVAPEVLHRSYSTEADMWSIGVITYILLCGSRPFWARTESGIFRSVLRADPNFDDAPWSS
ISPEAKDFVKRLLNKDYRKRMTAAQALSHPWLRDECRPIPLDMLVFKLIKAYLRSTPFKRAALK
ALSRAITEDELIYIRAQYNLLEPSSTDGRLCIENFRMMTTAISIEDVRREVKILKALSGHSNLV
KFYDACEDALNVYIIMELCEGGELLDRILSRGGRYTEEDAKVIVEQILNVVSFCHLQGVVHRDL
KPENFLFSTRDDHSPMKIIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSTEADMWSIGVI
TYILLCGSRPFWARTESGIFRSVLRADPNFDDAPWSSISPEAKDFVKRLLNKDYRKRMTAAQAL
SHPWLRDECRPIPLDMLVFKLIKAYLRSTPFKRAALKALSRAITEDELIYIRAQYNLLEPSSTD
GRLCIENFRMMTTAISIEDVRREVKILKALSGHSNLVKFYDACEDALNVYIIMELCEGGELLDR
ILSRGGRYTEEDAKVIVEQILNVVSFCHLQGVVHRDLKPENFLFSTRDDHSPMKIIDFGLSDFI
RPDERLNDIVGSAYYVAPEVLHRSYSTEADMWSIGVITYILLCGSRPFWARTESGIFRSVLRAD
PNFDDAPWSSISPEAKDFVKRLLNKDYRKRMTAAQALSHPWLRDECRPIPLDMLVFKLIKAYLR
STPFKRAALKALSRAITEDELIYIRAQYNLLEPSSTDGRLCIENFRMMTTAISIEDVRREVKIL
KALSGHSNLVKFYDACEDALNVYIIMELCEGGELLDRILSRGGRYTEEDAKVIVEQILNVVSFC
HLQGVVHRDLKPENFLFSTRDDHSPMKIIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYST
EADMWSIGVITYILLCGSRPFWARTESGIFRSVLRADPNFDDAPWSSISPEAKDFVKRLLNKDY
RKRMTAAQALSHPWLRDECRPIPLDMLVFKLIKAYLRSTPFKRAALKALSRAITEDELIYIRAQ
YNLLEPSSTDGRLCIENFRM(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017