Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os10g0510700_circ_g.2 |
| ID in PlantcircBase | osa_circ_007640 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr10: 19641665-19644024 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os10g0510700 |
| Parent gene annotation |
Similar to calcium dependent protein kinase1. (Os10t0510700-00) |
| Parent gene strand | - |
| Alternative splicing | Os10g0510700_circ_g.1 Os10g0510700_circ_g.3 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os10t0510700-00:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.273903302 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
19644026-19641667(-) |
| Potential amino acid sequence |
MTTAISIEDVRREVKILKALSGHSNLVKFYDACEDALNVYIIMELCEGGELLDRILSRGGRYTE EDAKVIVEQILNVVSFCHLQGVVHRDLKPENFLFSTRDDHSPMKIIDFGLSDFIRPDERLNDIV GSAYYVAPEVLHRSYSTEADMWSIGVITYILLCGSRPFWARTESGIFRSVLRADPNFDDAPWSS ISPEAKDFVKRLLNKDYRKRMTAAQALSHPWLRDECRPIPLDMLVFKLIKAYLRSTPFKRAALK ALSRAITEDELIYIRAQYNLLEPSSTDGRLCIENFRMMTTAISIEDVRREVKILKALSGHSNLV KFYDACEDALNVYIIMELCEGGELLDRILSRGGRYTEEDAKVIVEQILNVVSFCHLQGVVHRDL KPENFLFSTRDDHSPMKIIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSTEADMWSIGVI TYILLCGSRPFWARTESGIFRSVLRADPNFDDAPWSSISPEAKDFVKRLLNKDYRKRMTAAQAL SHPWLRDECRPIPLDMLVFKLIKAYLRSTPFKRAALKALSRAITEDELIYIRAQYNLLEPSSTD GRLCIENFRMMTTAISIEDVRREVKILKALSGHSNLVKFYDACEDALNVYIIMELCEGGELLDR ILSRGGRYTEEDAKVIVEQILNVVSFCHLQGVVHRDLKPENFLFSTRDDHSPMKIIDFGLSDFI RPDERLNDIVGSAYYVAPEVLHRSYSTEADMWSIGVITYILLCGSRPFWARTESGIFRSVLRAD PNFDDAPWSSISPEAKDFVKRLLNKDYRKRMTAAQALSHPWLRDECRPIPLDMLVFKLIKAYLR STPFKRAALKALSRAITEDELIYIRAQYNLLEPSSTDGRLCIENFRMMTTAISIEDVRREVKIL KALSGHSNLVKFYDACEDALNVYIIMELCEGGELLDRILSRGGRYTEEDAKVIVEQILNVVSFC HLQGVVHRDLKPENFLFSTRDDHSPMKIIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYST EADMWSIGVITYILLCGSRPFWARTESGIFRSVLRADPNFDDAPWSSISPEAKDFVKRLLNKDY RKRMTAAQALSHPWLRDECRPIPLDMLVFKLIKAYLRSTPFKRAALKALSRAITEDELIYIRAQ YNLLEPSSTDGRLCIENFRM(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |