Detail information of Os10g0457700_circ_g.6


General Information
CircRNA Name Os10g0457700_circ_g.6
ID in PlantcircBase osa_circ_007005
Alias NA
Organism Oryza sativa
Position chr10: 16796767-16797449  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0457700
Parent gene annotation Similar to chromatin remodeling complex subunit. (Os10t0457700-0
1)
Parent gene strand +
Alternative splicing Os10g0457700_circ_g.4 Os10g0457700_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0457700-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTAAACAGAAAGGAAATTTGCGCCAAGAAGATGTCGAGTCCTTTCTGATGGATGAGAGCTCTA
GTGATGATAATATTGAAAATTACTTGCCAAATGGAGatggttgattttgttagggaaggttatc
ttggaagtagccatgagttccgtaacaggtaaattgatgctctgatctcttttactgtggcaaa
ttaatatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGTTGATTTTGTTAGGGAAGGTTATCTTGGAAGTAGCCATGAGTTCCGTAACAGGTAAATTG
ATGCTCTGATCTCTTTTACTGTGGCAAATTAATATTCTGGACATTTGAATGATATGCTTTGCAT
TATCAGGTTCCAGAACCCCATTGAAAATGGGCAGCACACGAATTCTACATCAGATGATGTCAAG
ATCATGAACCAACGGTCACATATTCTGTATGAACAACTGAAGGGATTTGTCCAGCGAATGGACA
TGAACGTGGTGAAGAATGATCTACCAGAAAAGAAGGTTTTTGTTGTTACTGTTAAACTCTCTCA
ACTACAAAGGAAGCTGTACAGAAGATTCTTGGACGTGAATGGTTTCTCAAGCAGTGCTGCTTCA
GAAAAATCTTTTCAGCGGAGTGGCTTCTTTGCCAAGTACCAAACGTTAGCGCTGGTGCGACATT
TTTGCATCTTTATGTCTTTATTAGATAACATGCCAATGTTCTGTTGTACTATCATATTTGTTTA
CGTTCTTTCTTCTCATGCCCGACAATATGCTTCAAGTGTAGATATGGAACCATCCTGGTCTTCT
CCAGATGGCTAAACAGAAAGGAAATTTGCGCCAAGAAGATGTCGAGTCCTTTCTGATGGATGAG
AGCTCTAGTGATGATAATATTGAAAATTACTTGCCAAATGGAG
Conservation Information
Conserved circRNAs osi_circ_008467
PMCS 0.210701769
Functional Information
Coding potential Y
Potential coding position 16796768-16796771(+)
16797403-16796771(+)
16796810-16797413(-)
Potential amino acid sequence MVDFVREGYLGSSHEFRNRFQNPIENGQHTNSTSDDVKIMNQRSHILYEQLKGFVQRMDMNVVK
NDLPEKKVFVVTVKLSQLQRKLYRRFLDVNGFSSSAASEKSFQRSGFFAKYQTLALIWNHPGLL
QMAKQKGNLRQEDVESFLMDESSSDDNIENYLPNGDG*(+)
MRALVMIILKITCQMEMVDFVREGYLGSSHEFRNRFQNPIENGQHTNSTSDDVKIMNQRSHILY
EQLKGFVQRMDMNVVKNDLPEKKVFVVTVKLSQLQRKLYRRFLDVNGFSSSAASEKSFQRSGFF
AKYQTLALIWNHPGLLQMAKQKGNLRQEDVESFLMDESSSDDNIENYLPNGDG*(+)
MATSKITFPNKINHLHLASNFQYYHH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017