Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0457700_circ_g.6 |
ID in PlantcircBase | osa_circ_007005 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 16796767-16797449 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0457700 |
Parent gene annotation |
Similar to chromatin remodeling complex subunit. (Os10t0457700-0 1) |
Parent gene strand | + |
Alternative splicing | Os10g0457700_circ_g.4 Os10g0457700_circ_g.5 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0457700-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008467 |
PMCS | 0.210701769 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
16796768-16796771(+) 16797403-16796771(+) 16796810-16797413(-) |
Potential amino acid sequence |
MVDFVREGYLGSSHEFRNRFQNPIENGQHTNSTSDDVKIMNQRSHILYEQLKGFVQRMDMNVVK NDLPEKKVFVVTVKLSQLQRKLYRRFLDVNGFSSSAASEKSFQRSGFFAKYQTLALIWNHPGLL QMAKQKGNLRQEDVESFLMDESSSDDNIENYLPNGDG*(+) MRALVMIILKITCQMEMVDFVREGYLGSSHEFRNRFQNPIENGQHTNSTSDDVKIMNQRSHILY EQLKGFVQRMDMNVVKNDLPEKKVFVVTVKLSQLQRKLYRRFLDVNGFSSSAASEKSFQRSGFF AKYQTLALIWNHPGLLQMAKQKGNLRQEDVESFLMDESSSDDNIENYLPNGDG*(+) MATSKITFPNKINHLHLASNFQYYHH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |