Detail information of BGIOSGA033078_circ_g.5


General Information
CircRNA Name BGIOSGA033078_circ_g.5
ID in PlantcircBase osi_circ_008467
Alias Chr10:18472542_18473225(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15378260-15378943  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033078
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033078_circ_g.4 BGIOSGA033078_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033078-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTAAACAGAAAGGAAATTTGCGCCAAGAAGATGTCGAGTCCTTTCTGATGGATGAGAGCTCTA
GTGATGATAATATTGAAAATTACTTGCCAAATGGAGgatggttgattttgttagggaaggttat
cttggaagtagccatgagttccgtaacaggtaaattgatgctctgatctcttttactgtggcaa
attaatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGGTTGATTTTGTTAGGGAAGGTTATCTTGGAAGTAGCCATGAGTTCCGTAACAGGTAAATT
GATGCTCTGATCTCTTTTACTGTGGCAAATTAATATTCTGGACATTTGAATGATATGCTTTGCA
TTATCAGGTTCCAGAACCCCATTGAAAATGGGCAGCACACGAATTCTACATCAGATGATGTCAA
GATCATGAACCAACGGTCACATATTCTGTATGAACAACTGAAGGGATTTGTCCAGCGAATGGAC
ATGAACGTGGTGAAGAATGATCTACCAGAAAAGAAGGTTTTTGTTGTTACTGTTAAACTCTCTC
AACTACAAAGGAAGCTGTACAGAAGATTCTTGGACGTGAATGGTTTCTCAAGCAGTGCTGCTTC
AGAAAAATCTTTTCAGCGGAGTGGCTTCTTTGCCAAGTACCAAACGTTAGCGCTGGTGCGACAT
TTTTGCATCTTTATGTCTTTATTAGATGACATGCCAATGTTCTGTTGTACTATCATATTTGTTT
ACGTTCTTTCTTCTCATGCCCGACAATATGCTTCAAGTGTAGATATGGAACCATCCTGGTCTTC
TCCAGATGGCTAAACAGAAAGGAAATTTGCGCCAAGAAGATGTCGAGTCCTTTCTGATGGATGA
GAGCTCTAGTGATGATAATATTGAAAATTACTTGCCAAATGGAG
Conservation Information
Conserved circRNAs osa_circ_007005
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021