Detail information of Os02g0101800_circ_g.4


General Information
CircRNA Name Os02g0101800_circ_g.4
ID in PlantcircBase osa_circ_012610
Alias NA
Organism Oryza sativa
Position chr2: 99139-102757  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0101800
Parent gene annotation Kinesin, motor domain domain containing protein. (Os02t0101800-0
1)
Parent gene strand -
Alternative splicing Os02g0101800_circ_g.1 Os02g0101800_circ_g.2 Os02g0101800_circ_g.3 Os02g0101800_circ_g.5 Os02g0101800_circ_g.6 Os02g0101800_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0101800-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTAAAACAGTCCATAAAGCCCTGGCAAAGTTTGTCATTATTTCTTCATTTCTCGAAACTCTTC
GCAATTCTGAATTAAGAAGCTTGTACTGTGACTCATtattggagctttccttggggaagatttt
ccatttagcgtacatggatacatgcctccatgatcatccactacatgtggaggttgagcacagc
ctacaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TATTGGAGCTTTCCTTGGGGAAGATTTTCCATTTAGCGTACATGGATACATGCCTCCATGATCA
TCCACTACATGTGGAGGTTGAGCACAGCCTACAAAAATTGTGTTCCATTGATAATGTAATACAA
CATTTCAGAAGGATATAGACAATCATATACAACATGCCCACACCAAATTAAGCACGACCAATGC
TTTTGTTTTATGAGATATTACACATTACATACCATATTCCACAATGGTTATTTCTACTGTTGGC
TTGCATCTTTCTGACTGAGGATCCTGCTGAAGAGCACCCTAAAGAAAAGGCACAAACATATGTC
TTAGACTTTCCAACAAGGCAACAACGATTTAGCATAGAAAGAAGAAGCGCCACTTGCATGCAAT
CATATTTCATCCTGAGAAATAGATTAAAAGAATAAGAATAGCAGCTAACCTTGATTATGTAAGG
AAATATTTTCAGTGCACAAAGGGATTATGGACAGTGTTCTACAACTTGACTAGGATATTATTGT
GTTATTTTTGGAACTTTGAAGGAGCTCAGTACCACAGTGAAAATAGAATATGCATTACGCTCCA
CATCCCCATACTTCCATAGCTCTAAAGAATCAATCTCTTCTTTCTTCCCAAGAGCTCTCTTCCC
AGCCTAGCAAGAAACATCCCCTTCTAAACCCCCAATGGCAGCCATCACCAGTTCACTACCCTCC
CCAAACTCCCATAATAGAAAAACACAACGAACAAATCAAAGGTGGAAAACTCAAATGTACAAAT
GGATAACTGTTTGATGCAACAAACTGCTTGATTGTGCTAAGAACAATACAAAGATACGTACAAA
GATACAAAAAGAATTAAAATATTAAATTGTTCCATACCATCCCTTGCAACTGACTGGAGCTAAC
ATGTAATGAGCCAGAGTTCACTTCTTGGGAACAACTTGGAGTACTATGATGTTTCACCCCTGTC
AAAAGATCCAACAAAATTGTGATAAAATGGTGCATCATGAGCAAAATATTGCAACATGGAACTT
GTTAACCTCTTGTGTGAACATTCTGTTGAATCCCCTCCGTTGTTATATTGTGTATCTCTTCCCT
TTCTTCTTCACTTTGCTCTATGGGAGATTTCTTGCTAGCACCAATAAATTGTGGAGACAGGTTT
GCGCTTTCATTCTGTAGGCATGTATCTGCACAAGTGACCTTTTGTGTCAGTTGACCTTATTGTC
TACACAATATTTTTATTTTTAGAAGTCACACAGAAAGGACTTCCCTTGCAAAAATGGTACCACG
ATCTTTAAATGGAACTCTAATTTCCACATCAGAAGAAATATGTTTCCTAATTTTATTCTATTGT
GTGAGTGTTACCATGTTAAATTATTCAGCGGGAAGAAAAACATAGAAACTTTAAGAACCTGTAA
AGCTTTGATCAGATGGATGATCCAAACTACTGGATGAATGTGTGACACCACCACCATCAGAGCA
ACTTTCAGACCTATCCAACTTCTTATCAAGCACCTGTACCACTATCTAAAAAAAGAGAAAAGTA
AGATATGGTTTATCCACTTGTACAGTCAAGATAGATTATACTCTCTTTTTTCAAGTGTTCCAGT
AAACATCTCTAAAAAACCTTAATAAGAGACTGAGTGGTACTTGAAAATCCAAGGTAAAACAAGA
TTCTTCTACGCATGTGTGAGAAAGAGGGAGAGAGATAGAGTACATATTACCCCAATGTTTTCTT
TTTCCACATCATGCTCAGGAATAAAAGCATCGGAACTACTTGCTTTCTCTGGCTAAAAGAACAG
GATGATGGTCCATATGTCAGTAAAAGATGCAGCAATGTTCCTCGAGTATCAACATCATGACATC
TTTTTGAAAAAGAACTACATGAGCATTTCTCCATGAGGATCCAAAGGTCCAAACCAGTAAGTAT
CATACCTTACAATCTCCGGAGCACAATTCTTCTTCCGCTATCAGCTTAATAATAGAAGTATCAC
AAACATCAGATCCCCCTGTCCCTGTTATAGAAAAATGGATTCTCAGGCCTATGAGAACCATCTG
ATGATATTGTCCTGAACATGTACACCATGGAAATGTAACCTGTCTTGTCATCATAATCTGAAGA
CCTTTCAGGGCCATGACCTGTAGATTCTTCTGAGACCTCTTCTACTGCTAACTGTAGGAAAAAA
GAAGTTCGCTTAGTGCTATGCTGTATAACATGCAAAAGAATATTATCAAGAAAGCTCCAACCTC
ATTTATATCTGCATTTGAACTTTGCATATAACATGCCCTAAAAATTAAGAAACTGCATCTTATT
GAATATAGACTATTGGCGTGCAGGCATAAAAGGGGAGATATTTTGCTTCCCATTAGGCAAGTAG
TACATAAGAAAAAAAATGGTGCACTATGTAAAAAACAATCCAAAGGGCAGAAGATCGTAACTAT
CAAAGGAAGTGAAGGGTTAGGAACAGGCTGCTGTTCGATGCAACCAGAGCATGAGATTTTATGA
CATTGAAGTTTTAAGCATGCTCAACTGCGCCAGGTATCAACTCATTACAGTAAGTTTAATCTGA
CGTAAACATTGTGACAGCCCTTCTAAAGCCTAACAGCATATCTACAGAGTTTGATGGAATAAAA
GATACAAGGAGTGTTAAGCACTCTGTTTGCTTGTAGAGCTTTAGATCCAAGACATACTTATTCA
AACATTACTTTAGTTAAAAGGCACTCAATGAAAATCTAAGTAAAAAACCAAATGTGAGGTTTTC
CTGTTTGAAGTTTCTTTAACTTACAGATTTGTTTAGAGCAGAGTCAATAGATACAAGATCAGTT
TGACTTGATAGAGAAACAAAACTTTGAGCCACTTGACCAGAAGACACATCATTGTTTTGCTCAA
CAAAGGTATCTTCAACAGCTGGAAATTTCTTGCATGAACAACTTAGAACCTTCAACTTCTTCTC
CAGCTCCATAATTTTGATGTCTTTAGATCTAAGCAATTCTCTTGTGCTCTCAACAGCATTCTCA
GACTCCTACAGGCAAACATGTGAATTAAAAAAGGACAAAAAAATCTATGGTGAATTTATTGATC
TATATATCCCATACAATATAAACCTACTAAGTGAAATTATGGCATTTCTACTTTTCTCACAAAA
GCACATCATCATAATTTTCTAGCATTTTGATAATTGATCTAGGGTAGTAGGGTGTAGATTGTAC
CACAAAGCCAAGCCGTCTAGCTATAATTCAAATCCACCTCGGACCTCATGTTAACCATTTTGTC
ACGCTAATTTCACATGGCGACACACAAGGTTTATATCTAGTTTCATTAACAACTAAAAACAGTG
AAATTTCAAGAGCACTAGATATACAACAATAAATCCCACTTCAAGCATGTTATGTTCCTTACTT
GACTTCACTACCCATCCTTAGAACTTACCACATTGAAGACAGACATCAATATTCCACATTCTGG
TCAATTAAACAGAGATAAGCAATATAAAGGCAGGAAATTACCAAAAGTTTTTGTTTATACTGCT
TTAAAACAGTCCATAAAGCCCTGGCAAAGTTTGTCATTATTTCTTCATTTCTCGAAACTCTTCG
CAATTCTGAATTAAGAAGCTTGTACTGTGACTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.089781639
Functional Information
Coding potential Y
Potential coding position 102100-100030(+)
99183-102697(-)
102697-102697(-)
Potential amino acid sequence MSLDLSNSLVLSTAFSDSKSFCLYCFKTVHKALAKFVIISSFLETLRNSELRSLYCDSLLELSL
GKIFHLAYMDTCLHDHPLHVEVEHSHIPQWLFLLLACIFLTEDPAEEHPSLATDWS*(+)
MYAKWKIFPKESSNNESQYKLLNSELRRVSRNEEIMTNFARALWTVLKQYKQKLLESENAVEST
RELLRSKDIKIMELEKKLKVLSCSCKKFPAVEDTFVEQNNDVSSGQVAQSFVSLSSQTDLVSID
SALNKSLAVEEVSEESTGHGPERSSDYDDKTGTGGSDVCDTSIIKLIAEEELCSGDCKPEKASS
SDAFIPEHDVEKENIGIVVQVLDKKLDRSESCSDGGGVTHSSSSLDHPSDQSFTDTCLQNESAN
LSPQFIGASKKSPIEQSEEEREEIHNITTEGIQQNVHTRGVKHHSTPSCSQEVNSGSLHVSSSQ
LQGMGALQQDPQSERCKPTVEITIVEYGCAQPPHVVDDHGGMYPCTLNGKSSPRKAPIMSHSTS
FLIQNCEEFREMKK*(-)
MTNFARALWTVLKQYKQKLLESENAVESTRELLRSKDIKIMELEKKLKVLSCSCKKFPAVEDTF
VEQNNDVSSGQVAQSFVSLSSQTDLVSIDSALNKSLAVEEVSEESTGHGPERSSDYDDKTGTGG
SDVCDTSIIKLIAEEELCSGDCKPEKASSSDAFIPEHDVEKENIGIVVQVLDKKLDRSESCSDG
GGVTHSSSSLDHPSDQSFTDTCLQNESANLSPQFIGASKKSPIEQSEEEREEIHNITTEGIQQN
VHTRGVKHHSTPSCSQEVNSGSLHVSSSQLQGMGALQQDPQSERCKPTVEITIVEYGCAQPPHV
VDDHGGMYPCTLNGKSSPRKAPIMSHSTSFLIQNCEEFREMKK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017