Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0101800_circ_g.6 |
ID in PlantcircBase | osa_circ_012612 |
Alias | NA |
Organism | Oryza sativa |
Position | chr2: 101064-103047 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os02g0101800 |
Parent gene annotation |
Kinesin, motor domain domain containing protein. (Os02t0101800-0 1) |
Parent gene strand | - |
Alternative splicing | Os02g0101800_circ_g.1 Os02g0101800_circ_g.2 Os02g0101800_circ_g.3 Os02g0101800_circ_g.4 Os02g0101800_circ_g.5 Os02g0101800_circ_g.7 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os02t0101800-01:5 |
Conservation Information | |
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Conserved circRNAs | osi_circ_011514 |
PMCS | 0.094635194 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
102100-101239(+) 102697-101066(-) |
Potential amino acid sequence |
MSLDLSNSLVLSTAFSDSKSFCLYCFKTVHKALAKFVIISSFLETLRNSELRSLYCDSSFSEIV TPSSLSMSSFPATLQSPEHNSSSAISLIIEVSQTSDPPVPVLSS*(+) MTNFARALWTVLKQYKQKLLESENAVESTRELLRSKDIKIMELEKKLKVLSCSCKKFPAVEDTF VEQNNDVSSGQVAQSFVSLSSQTDLVSIDSALNKSLAVEEVSEESTGHGPERSSDYDDKTGTGG SDVCDTSIIKLIAEEELCSGDCKVAGKDDIDKDDGVTISEKDESQYKLLNSELRRVSRNEEIMT NFARALWTVLKQYKQKLLESENAVESTRELLRSKDIKIMELEKKLKVLSCSCKKFPAVEDTFVE QNNDVSSGQVAQSFVSLSSQTDLVSIDSALNKSLAVEEVSEESTGHGPERSSDYDDKTGTGGSD VCDTSIIKLIAEEELCSGDCKVAGKDDIDKDDGVTISEKDESQYKLLNSELRRVSRNEEIMTNF ARALWTVLKQYKQKLLESENAVESTRELLRSKDIKIMELEKKLKVLSCSCKKFPAVEDTFVEQN NDVSSGQVAQSFVSLSSQTDLVSIDSALNKSLAVEEVSEESTGHGPERSSDYDDKTGTGGSDVC DTSIIKLIAEEELCSGDCKVAGKDDIDKDDGVTISEKDESQYKLLNSELRRVSRNEEIMTNFAR ALWTVLKQYKQKLLESENAVESTRELLRSKDIKIMELEKKLKVLSCSCKKFPAVEDTFVEQNND VSSGQVAQSFVSLSSQTDLVSIDSALNKSLAVEEVSEESTGHGPERSSDYDDKTGTGGSDVCDT SIIKLIAEEELCSGDCK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |