Detail information of Os04g0491700_circ_g.4


General Information
CircRNA Name Os04g0491700_circ_g.4
ID in PlantcircBase osa_circ_024346
Alias Os_ciR1810
Organism Oryza sativa
Position chr4: 24568805-24569939  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0491700
Parent gene annotation Sugar/inositol transporter domain containing protein. (Os04t0491
700-01)
Parent gene strand -
Alternative splicing Os04g0491700_circ_g.2 Os04g0491700_circ_g.3
Support reads 7
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0491700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAAATGGAGGTTGAATGTCTACCTCAGTAAAGCCAAGATTGATGAGGTAGGAGAAGAATTGAC
CACCAGTAATCATGAGTACATTAGTTGACACCAAACtgtagaattgcaggcacagcagcaactc
cgagcatccagcgccatgttccaggaacctatgacatgtagcatgcatatcattgcaagtttgc
aactactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTAGAATTGCAGGCACAGCAGCAACTCCGAGCATCCAGCGCCATGTTCCAGGAACCTATGACA
TGTAGCATGCATATCATTGCAAGTTTGCAACTACTCGTACTAATGTATTACCAGCTTACGAATA
TCTCCACTATAACTCTCAAGAAAGATGGTTGTATATCTTCTTTTATAGGACATCTTATATTGTT
TTCTAATAATGCAGGATTTGTTATGCATCAAGATTATGAAACCCCAAGTCAAATTATAAGGAGA
CGCACAATGATAATTTAATATTGTTGGTCATTGCTTTATAAGGTTCTACTTGACTGAATTATTT
GATTCAAATGACACATAATTTTTCATCCTCAGGTAAGTAAAGTGGTACTTCAAGAACAAACAGT
GAATAGGCTACTGAAATCACAAAATCATATGATGTGCCAAGGGATAAAATGTGCATTTCAGATA
AATACAGGAAGTTCATTTAAGAAAAAAGAAAACAGAATGATGTATATACTGCAGTGAATTTCAG
AAACAGAAAGATGGAGCATTAACACTAGAGTGGCTACGCACCAAACAACACCTTGTTGGTGATT
CATCCATTGCTGCTGGCAAGGAAGCTGACTCTTGTTCATTGCTAATTAAGTGTTACACAGTTAA
CTAGCACCAACAGGAATGTTAATACCATAAAAGGTAAATATATGAAAAGGAGAAAAAGGTAGTA
TAAACATGGCATTGATGCTGAAATCCTTTCTCAAGGGAGTTCATCTTGAATAACATAACATGTG
CAGCTTTTCCATGGTTCTTGTGCAAGAGTACCGACCCCAAGCTTGTTATTTTTTCATTAAAGAT
ATGATGCGAGCTCATATATATACTTAGTTGCAGTTAACAGTTAAGTTCCCCATGGCAGTGCAAG
ACCTGGTTTGTGGAAGCTCAATAAAAAAATTTCAACTGCAATGTTTTCAGCTTGAACTTGTTCC
GTTTATAGTTGAATGTTAAAAGAACTTAAACTGAAAACTGCTAATGTGTAGGAATAATGGAATA
AAATATGCTAATTAAATGGAGGTTGAATGTCTACCTCAGTAAAGCCAAGATTGATGAGGTAGGA
GAAGAATTGACCACCAGTAATCATGAGTACATTAGTTGACACCAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.215391814
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015