Detail information of Os04g0491700_circ_g.2


General Information
CircRNA Name Os04g0491700_circ_g.2
ID in PlantcircBase osa_circ_024344
Alias NA
Organism Oryza sativa
Position chr4: 24568487-24568860  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0491700
Parent gene annotation Sugar/inositol transporter domain containing protein. (Os04t0491
700-01)
Parent gene strand -
Alternative splicing Os04g0491700_circ_g.3 Os04g0491700_circ_g.4
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0491700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGCCAACGGGGAGATTCTGGCAAAAAAAGCATCAGAACAAACTGTAGAATTGCAGGCACAGC
AGCAACTCCGAGCATCCAGCGCCATGTTCCAGGAACctgaagaccagctccagcaaaaaatgct
agccttagttcctttgacttgaaaatgtccaaatagctcccagtaccatcagactgaaattcat
gcattgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 294
Transcript exons: 24568487-24568672,24568753-24568860
CTGAAGACCAGCTCCAGCAAAAAATGCTAGCCTTAGTTCCTTTGACTTGAAAATGTCCAAATAG
CTCCCAGTACCATCAGACTGAAATTCATGCATTGAAGAAGAAGCAAGAAGCTCTACCTCTTCCT
CTAGACGGTCAGAGTCATAAATCTTCTCTAGGACAGAAATAGCTTTTGCTTTCTCATCCTTCCA
GAAAAGCCAACGGGGAGATTCTGGCAAAAAAAGCATCAGAACAAACTGTAGAATTGCAGGCACA
GCAGCAACTCCGAGCATCCAGCGCCATGTTCCAGGAAC

Genomic sequence CTGAAGACCAGCTCCAGCAAAAAATGCTAGCCTTAGTTCCTTTGACTTGAAAATGTCCAAATAG
CTCCCAGTACCATCAGACTGAAATTCATGCATTGAAGAAGAAGCAAGAAGCTCTACCTCTTCCT
CTAGACGGTCAGAGTCATAAATCTTCTCTAGGACAGAAATAGCTTTTGCTTTCTCATCCTGTAA
AGAAAAGTTAATGTAACAACAAAATGCAGATAAAAGGAGATAATACATGACTGAATAAAAGCTT
AAAATATAACCTTCCAGAAAAGCCAACGGGGAGATTCTGGCAAAAAAAGCATCAGAACAAACTG
TAGAATTGCAGGCACAGCAGCAACTCCGAGCATCCAGCGCCATGTTCCAGGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.387350602
Functional Information
Coding potential Y
Potential coding position 24568849-24568533(+)
24568841-24568489(-)
Potential amino acid sequence MFQEPEDQLQQKMLALVPLT*(+)
MLGVAAVPAILQFVLMLFLPESPRWLFWKDEKAKAISVLEKIYDSDRLEEEVELLASSSMHEFQ
SDGTGSYLDIFKSKELRLAFFAGAGLQVPGTWRWMLGVAAVPAILQFVLMLFLPESPRWLFWKD
EKAKAISVLEKIYDSDRLEEEVELLASSSMHEFQSDGTGSYLDIFKSKELRLAFFAGAGLQVPG
TWRWMLGVAAVPAILQFVLMLFLPESPRWLFWKDEKAKAISVLEKIYDSDRLEEEVELLASSSM
HEFQSDGTGSYLDIFKSKELRLAFFAGAGLQVPGTWRWMLGVAAVPAILQFVLMLFLPESPRWL
FWKDEKAKAISVLEKIYDSDRLEEEVELLASSSMHEFQSDGTGSYLDIFKSKELRLAFFAGAGL
Q(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017