Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037808_circ_g.11 |
ID in PlantcircBase | zma_circ_009067 |
Alias | Zm06circ00066, GRMZM2G424783_C1 |
Organism | Zea mays |
Position | chr6: 138480530-138480888 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d037808 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | Zm00001d037808_circ_g.10 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d037808_T004:2 Zm00001d037808_T009:1 Zm00001d037808_T005:2 Zm00001d037808_T003:2 Zm00001d037808_T002:2 Zm00001d037808_T001:2 Zm00001d037808_T006:2 |
Conservation Information | |
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Conserved circRNAs | osa_circ_027357* |
PMCS | 0.237319281 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
138480774-138480572(+) 138480856-138480561(+) 138480555-138480789(-) 138480810-138480532(-) |
Potential amino acid sequence |
MGCVNQEKNFFHLFSVLPQILINFVGRYASCFLFQELLICIENIVSIFQLKLF*(+) MPAASCSKSSSSVLKTLSAFFN*(+) MLTMFSIQMRSSWNKKQLAYLPTKLMRICGRTENKWKKFFS*(-) MEEILFLINTSHRPVALQQKSTPEDAEIVCTLDDIEAKLKDMLKNLEQFQLKNADNVFNTDEEL LEQEAAGIPAHKIDENLWKNREQMEEILFLINTSHRPVALQQKSTPEDAEIVCTLDDIEAKLKD MLKNLEQFQLKNADNVFNTDEELLEQEAAGIPAHKIDENLWKNREQMEEILFLINTSHRPVALQ QKSTPEDAEIVCTLDDIEAKLKDMLKNLEQFQLKNADNVFNTDEELLEQEAAGIPAHKIDENLW KNREQMEEILFLINTSHRPVALQQKSTPEDAEIVCTLDDIEAKLKDMLKNLEQFQLKNADNVFN T(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |