Detail information of Os03g0165400_circ_g.5


General Information
CircRNA Name Os03g0165400_circ_g.5
ID in PlantcircBase osa_circ_018093
Alias NA
Organism Oryza sativa
Position chr3: 3529233-3529423  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0165400
Parent gene annotation Similar to Relative to SR12 protein (Fragment). (Os03t0165400-01
);Similar to Beta-galactosidase. (Os03t0165400-02)
Parent gene strand -
Alternative splicing Os03g0165400_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CA-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTATCGTTGTATAATTGTATTAACATGTTCGGTATAGTTTCACAATTTACACCTGATGGTGG
TAGTATTTGACAGAGGATAAGATCATCATACaaatatgctcatacatatgctagaaacctagaa
caccaatcatgacctcttatggagataacccactgaactcgcaaaaatacgaatcagcatgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAATATGCTCATACATATGCTAGAAACCTAGAACACCAATCATGACCTCTTATGGAGATAACCC
ACTGAACTCGCAAAAATACGAATCAGCATGTCCTGTATCGTTGTATAATTGTATTAACATGTTC
GGTATAGTTTCACAATTTACACCTGATGGTGGTAGTATTTGACAGAGGATAAGATCATCATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.110383944
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017