Detail information of AT5G19550_circ_g.9


General Information
CircRNA Name AT5G19550_circ_g.9
ID in PlantcircBase ath_circ_039257
Alias At_ciR344
Organism Arabidpsis thaliana
Position chr5: 6599739-6600183  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full
Parent gene AT5G19550
Parent gene annotation Aspartate aminotransferase
Parent gene strand +
Alternative splicing AT5G19550_circ_g.2 AT5G19550_circ_g.3 AT5G19550_circ_g.4 AT5G19550_circ_g.5 AT5G19550_circ_g.6 AT5G19550_circ_g.7 AT5G19550_circ_g.8 AT5G19550_circ_g.10 AT5G19550_circ_g.11 AT5G19550_circ_g.12 AT5G19550_circ_g.13
Support reads 13/5
Tissues leaf/whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G19550.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTCCGTACATTTGTTGCTGATGGCGGTGAATGCTTGATAGCTCAAAGTTACGCCAAAAATATG
GGACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATTgcttgctcgaggatcttggcgctgcacc
atctggagctattgtcttacttcatgcatgtgcacacaatcccactggagttgacccaacctct
gaacagtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 302
Transcript exons: 6599739-6599902,6600046-6600183
GCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTCATGCATGTGCACA
CAATCCCACTGGAGTTGACCCAACCTCTGAACAGTGGGAACAGATTCGACAGCTGATGAGATCT
AAAAGCTTATTACCCTTTTTTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACACAG
ATGCACAATCTGTCCGTACATTTGTTGCTGATGGCGGTGAATGCTTGATAGCTCAAAGTTACGC
CAAAAATATGGGACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATT

Genomic sequence GCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTCATGCATGTGCACA
CAATCCCACTGGAGTTGACCCAACCTCTGAACAGTGGGAACAGATTCGACAGCTGATGAGATCT
AAAAGCTTATTACCCTTTTTTGATAGTGCATATCAGGTAGCACTCATAAAGGAAGTCTTGCTTT
GTTGCTTTATTCAATGGTGGTTTACAAACAAATGAACCCCGTTATAGTGTATGCTTGAATCTTA
TCTAATGTAGAAAAATAGCAGCCTGACTCATTTTTCCTAACACTTTTGCAGGGTTTTGCTAGTG
GTAGCCTTGACACAGATGCACAATCTGTCCGTACATTTGTTGCTGATGGCGGTGAATGCTTGAT
AGCTCAAAGTTACGCCAAAAATATGGGACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATT
Conservation Information
Conserved circRNAs NA
PMCS 0.427368299
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017