Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d028177_circ_g.2 |
ID in PlantcircBase | zma_circ_000562 |
Alias | circ2503 |
Organism | Zea mays |
Position | chr1: 25551691-25553584 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d028177 |
Parent gene annotation |
Ubiquitin carboxyl-terminal hydrolase 26 |
Parent gene strand | - |
Alternative splicing | Zm00001d028177_circ_g.1 Zm00001d028177_circ_g.3 |
Support reads | 13 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d028177_T016:5 Zm00001d028177_T023:5 Zm00001d028177_T006:5 Zm00001d028177_T020:5 Zm00001d028177_T026:4 Zm00001d028177_T007:5 Zm00001d028177_T004:5 Zm00001d028177_T010:5 Zm00001d028177_T024:5 Zm00001d028177_T021:5 Zm00001d028177_T014:5 Zm00001d028177_T013:5 Zm00001d028177_T012:5 Zm00001d028177_T005:5 Zm00001d028177_T018:5 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.033342331 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chen et al., 2017b |