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circRNA ID
Zm00001d026238_circ_g.1
Alias
zma_circ_006433, circMo17-00576
Organism
Zea mays
Position
chr10: 141680501-141681100  JBrowse»
Reference genome
AGPv4.38
Type  
ei-circRNA
Identification method
CIRI, CIRCexplor2
Parent gene
Zm00001d026238
Parent gene annotation
Protein TRANSPARENT TESTA 12
Parent gene strand
-
Alternative splicing
NA
Splice junction sequence  
CAAGGATCTCGAACGACAAGTACTCGAAGCTGCAAGCCAAGCCATGCCATGCCACATTTTCAAC
AAAACAAATCTACAACACTCTGAAATTCAAGGATGGatagaaggccaccaggtttgtccacgcc
gccaggtgctgccacccgcagcccctggtgacgccgcagagtaccccctgcgtggagtccagca
cgacggag
Support reads
2
Tissues
leaf
Exon boundary  
No-No
Splicing signals  
GT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
ATAGAAGGCCACCAGGTTTGTCCACGCCGCCAGGTGCTGCCACCCGCAGCCCCTGGTGACGCCG
CAGAGTACCCCCTGCGTGGAGTCCAGCACGACGGAGCCGATGAGCAGCGGCGTCATGGAGGCGA
AGGCGCTGACCACGGCCTCGCTGGTGGTGAAGAGGCGCACCCAGAGGTCATGGCCGAGGCCCAG
TAGCAGCAGGAACACCACCCCCAGCATCAGGGACAGCGCCAGCGACACGGTGAGCGCCTTCCTG
GCGTTGGCGATGTTCCGGGCTCCCAGCTCGTTGGACACCCTTGTGCTGATGACAGCGGCGAAGC
CATAGGTGATCATGTATGATATGGCTTCGGTGTTTTGGCTGCTAGCAAACACGTAGAAATTACC
ACTTTATGTATTGTCGAAATGAATGATGATAGTAGCTAGAGTAAGTTAAGTTAATTACCACATC
ACAATGATGGAAGTGCTGAGCTGAGAGTCGGGCATCAGCCCTGCAAATAGCACAAGGATCTCGA
ACGACAAGTACTCGAAGCTGCAAGCCAAGCCATGCCATGCCACATTTTCAACAAAACAAATCTA
CAACACTCTGAAATTCAAGGATGG
Number of exons covered
Zm00001d026238_T002:2
Zm00001d026238_T001:2
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
141678966-141681076(-)
Potential amino acid sequence
MITYGFAAVISTRVSNELGARNIANARKALTVSLALSLMLGVVFLLLLGLGHDLWVRLFTTSEA
VVSAFASMTPLLIGSVVLDSTQGVLCGVTRGCGWQHLAAWTNLVAFYPSLNFRVL*
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Luo et al., 2019

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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