Detail information of Os03g0749800_circ_g.1


General Information
CircRNA Name Os03g0749800_circ_g.1
ID in PlantcircBase osa_circ_021915
Alias Os03circ26652/Os_ciR406
Organism Oryza sativa
Position chr3: 30890454-30892999  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRI, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene Os03g0749800
Parent gene annotation Similar to Tousled-like protein kinase. (Os03t0749800-01);Simila
r to Tousled-like kinase (Fragment). (Os03t0749800-02)
Parent gene strand -
Alternative splicing Os03g0749800_circ_g.2 Os03g0749800_circ_g.3 Os03g0749800_circ_g.4 Os03g0749800_circ_g.5 Os03g0749800_circ_g.6
Support reads 11/90/7
Tissues leaf and panicle/root/seed
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0749800-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAAGATAAACTAGGCCTTGAAATATTTGGACAATTATGATTCTCGCTTCCTTTTCTGGAAGAA
TCGGTGTTGCTTTAAGGACTGCATCAAGATCTTTGCcatttgctggtgcccatccccgtccaaa
ataaatatgttccggggttcttgcgcgagcggctgccgatccaaaatcttgtcctgcactcttt
cggagtga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 155
Transcript exons: 30890454-30890572,30892964-30892999
CATTTGCTGGTGCCCATCCCCGTCCAAAATAAATATGTTCCGGGGTTCTTGCGCGAGCGGCTGC
CGATCCAAAATCTTGTCCTGCACTCTTTCGGAGTGACTACCTCTTTGCATAAGACTCGGTGTTG
CTTTAAGGACTGCATCAAGATCTTTGC

Transcript length: 165
Transcript exons: 30890454-30890586,30892968-30892999
CATTTGCTGGTGCCCATCCCCGTCCAAAATAAATATGTTCCGGGGTTCTTGCGCGAGCGGCTGC
CGATCCAAAATCTTGTCCTGCACTCTTTCGGAGTGACTACCTCTTTGCATAAGACAGATAAGGT
TCTTGTGTTGCTTTAAGGACTGCATCAAGATCTTTGC

Transcript length: 184
Transcript exons: 30890454-30890495,30892858-30892999
CATTTGCTGGTGCCCATCCCCGTCCAAAATAAATATGTTCCGCCTGGTTTGAGATCATAGTGAA
TGATCTTTTGAGTTCTCTTGTTAAGATAAACTAGGCCTTGAAATATTTGGACAATTATGATTCT
CGCTTCCTTTTCTGGAAGAATCGGTGTTGCTTTAAGGACTGCATCAAGATCTTTGC

Transcript length: 196
Transcript exons: 30890454-30890507,30892858-30892999
CATTTGCTGGTGCCCATCCCCGTCCAAAATAAATATGTTCCGGGGTTCTTGCGCCCTGGTTTGA
GATCATAGTGAATGATCTTTTGAGTTCTCTTGTTAAGATAAACTAGGCCTTGAAATATTTGGAC
AATTATGATTCTCGCTTCCTTTTCTGGAAGAATCGGTGTTGCTTTAAGGACTGCATCAAGATCT
TTGC

Transcript length: 200
Transcript exons: 30890454-30890568,30892915-30892999
CATTTGCTGGTGCCCATCCCCGTCCAAAATAAATATGTTCCGGGGTTCTTGCGCGAGCGGCTGC
CGATCCAAAATCTTGTCCTGCACTCTTTCGGAGTGACTACCTCTTTGCATACCTTGAAATATTT
GGACAATTATGATTCTCGCTTCCTTTTCTGGAAGAATCGGTGTTGCTTTAAGGACTGCATCAAG
ATCTTTGC

Transcript length: 217
Transcript exons: 30890454-30890532,30892862-30892999
CATTTGCTGGTGCCCATCCCCGTCCAAAATAAATATGTTCCGGGGTTCTTGCGCGAGCGGCTGC
CGATCCAAAATCTTGGTTTGAGATCATAGTGAATGATCTTTTGAGTTCTCTTGTTAAGATAAAC
TAGGCCTTGAAATATTTGGACAATTATGATTCTCGCTTCCTTTTCTGGAAGAATCGGTGTTGCT
TTAAGGACTGCATCAAGATCTTTGC

Transcript length: 222
Transcript exons: 30890454-30890586,30892911-30892999
CATTTGCTGGTGCCCATCCCCGTCCAAAATAAATATGTTCCGGGGTTCTTGCGCGAGCGGCTGC
CGATCCAAAATCTTGTCCTGCACTCTTTCGGAGTGACTACCTCTTTGCATAAGACAGATAAGGT
TCTTGTAGGCCTTGAAATATTTGGACAATTATGATTCTCGCTTCCTTTTCTGGAAGAATCGGTG
TTGCTTTAAGGACTGCATCAAGATCTTTGC

Transcript length: 227
Transcript exons: 30890454-30890538,30892858-30892999
CATTTGCTGGTGCCCATCCCCGTCCAAAATAAATATGTTCCGGGGTTCTTGCGCGAGCGGCTGC
CGATCCAAAATCTTGTCCTGCCCTGGTTTGAGATCATAGTGAATGATCTTTTGAGTTCTCTTGT
TAAGATAAACTAGGCCTTGAAATATTTGGACAATTATGATTCTCGCTTCCTTTTCTGGAAGAAT
CGGTGTTGCTTTAAGGACTGCATCAAGATCTTTGC

Transcript length: 237
Transcript exons: 30890454-30890510,30892809-30892909,30892921-30892999
CATTTGCTGGTGCCCATCCCCGTCCAAAATAAATATGTTCCGGGGTTCTTGCGCGAGGCCAAAG
TCTGTAACTTTTGCAACACCAACCTCATCGAAGAGAACATTGCCTGGTTTGAGATCATAGTGAA
TGATCTTTTGAGTTCTCTTGTTAAGATAAAAATATTTGGACAATTATGATTCTCGCTTCCTTTT
CTGGAAGAATCGGTGTTGCTTTAAGGACTGCATCAAGATCTTTGC

Transcript length: 263
Transcript exons: 30890454-30890473,30890490-30890590,30892858-30892999
CATTTGCTGGTGCCCATCCCGTTCCGGGGTTCTTGCGCGAGCGGCTGCCGATCCAAAATCTTGT
CCTGCACTCTTTCGGAGTGACTACCTCTTTGCATAAGACAGATAAGGTTCTTGAGCGCCTGGTT
TGAGATCATAGTGAATGATCTTTTGAGTTCTCTTGTTAAGATAAACTAGGCCTTGAAATATTTG
GACAATTATGATTCTCGCTTCCTTTTCTGGAAGAATCGGTGTTGCTTTAAGGACTGCATCAAGA
TCTTTGC

Transcript length: 312
Transcript exons: 30890454-30890528,30890542-30890642,30892864-30892999
CATTTGCTGGTGCCCATCCCCGTCCAAAATAAATATGTTCCGGGGTTCTTGCGCGAGCGGCTGC
CGATCCAAAATCTTTCGGAGTGACTACCTCTTTGCATAAGACAGATAAGGTTCTTGAGCGATGG
TTAGAACGTCTGGTCTTTCTGCTTGGTTGTATGTCAAGCAGCGACGAATTGAGATCATAGTGAA
TGATCTTTTGAGTTCTCTTGTTAAGATAAACTAGGCCTTGAAATATTTGGACAATTATGATTCT
CGCTTCCTTTTCTGGAAGAATCGGTGTTGCTTTAAGGACTGCATCAAGATCTTTGC

Genomic sequence CATTTGCTGGTGCCCATCCCCGTCCAAAATAAATATGTTCCGGGGTTCTTGCGCGAGCGGCTGC
CGATCCAAAATCTTGTCCTGCACTCTTTCGGAGTGACTACCTCTTTGCATAAGACAGATAAGGT
TCTTGAGCGATGGTTAGAACGTCTGGTCTTTCTGCTTGGTTGTATGTCAAGCAGCGACGAATCA
GTTCCTGCGAGTTTTCAGGTGATGCAGGGTCAAACTTTTGCCAAACTATGTGCAATGTTATTTA
AACTAGTGTGTTGAGGGACAAAAGTTTAAACCAAACGGACAGCCTCAAAGGCACAACATGGAAA
ATATAGTAAAAGGGATCAATCTAACTGATGACTCTGAAATCAGAGATAACAGTAAACATACCTT
TGCCTCATTTGATACAGCTGGCTTTGAAGGGAATTCCACTCTGCGTGCGTTGATGATTGTATCT
TCCCGAAGTATTCTCTCCTGGGTCTGGTCATGGCCAAAAGGACGCCTTCCGAAGAGCATTTGGT
AAAACATTACACCCGCTGACCAAACATCCACCTGCAGGAATGCAAACATCAATTTTACCACCAA
TCAGAACAAAGATGAAGTTGCCCATAAGTGGTTTAAATTGATTACTCAGGGGGTTCACAAATGA
CTCTAACTGAAATAAGGGTTAAGAAGGAATCGCGTAACATTTTGAGTAAAAATTGCATATCCAC
ATGGCCATTGCCTGCATACCACTAAGCCCAACCAGTATTCCCCATCCCCATCAACAGCAGATCA
ATTCACCACCTGTGACCTGCACCTTCCTGCTCTTGCACCTCCTTCTGAAAACTAACCATCTGCA
CGGCCATTTCCCCTGGATCTGTCCAATGGGAACTACTATCAGACTGATCTATTTGGCACATAAT
TGTCTCGATATTGACACAATTTAAGCTGTGCATGTGAGTTTCTTGATAGTTTTCCCTGATTTTC
CTCATTCGCCACCTCTTTCCTGTTCTGTATTAAGTAACACTCTCATGATGTTGATCTTCTTCCT
ATTTTCCATAGTGCAAGAATTGGACTGGACGGTGGTAAAACTAGAAATGATCTGAACCAGTGAA
TGGTCTGGTTTGGCTTAGAAGAATGTCGGTCCATGTATACGAACTACGATAAAACCATATCCAG
TCCTACCAGCTCACAGCCTAAATGCAAAAAAATAAAAATAAAAAATGTTATGTATGCTGGGAAT
TGAACCCTGCAACTAGGACAGGCCTTGCAAAGTACTCCCACAATGCATCTAAGTACCTAACCAA
CTGGATAATGGTGATTTCCTCGCTTTAATGACAAACGAGTATATTCAGCCTGTTATTTTACTTA
CCAAACTGGCAAAACTATTATTTTCTCAAATCAGCATTTGGACCGGTGAAGTGCAGTCCAACTG
GCAAAAAGCAGAACCAAGGAGCTCACTAACTCAATCAATGGTCCAGGTTTTTGTACTACGAAGT
ATATTCTTTCTGAGGTTTTCAAGTATGGATAGAAAGCTCATCTTCTCTACTTATCTCCACGTAG
TGTCATAGCGTTCTCAATGCCCGTCAAAATACATCTTATAATTTGTACCAGAGGGAGTAATGCT
AATATCATATTAACATACTAGGGATTACTACTTAATGAATGCTGAAAATTTGGCAAGTGAGCAT
GATTTGCGCATGACTGCGGTCTCTGTTTATGACAAACAAACGCCACAAGAATCCCTAACATCCT
TATAGAAGGATCTTATTGATGCATGTTTTTGTCAAATTGCTTTAACACACTAAGATATGAAAGA
TTTATTAACATTAAAAGGAAAACATGTTGCCAAATATACCTTCGATGAGATAAATGGCGTTTTG
CTAAGATCAAAGCATTCCGGTGGCAGGTACCTGGAAGAAAAAGAAGAACATTAGGAAACAAATG
ATTGACATGCCAAAAGAACAATGGTTCTAAATGGGAAACAGCAACACTAACATAAATAAAAACT
AAATTTATGACATCATTTGTTCTATCCCACCTGTTTACATAAGACACTAGAGAAAAAAAATATT
TCATTGGTAGATAGTAGCATGAAAATGGTTGTACTTCATGCAATAACTATTAATTCCCTTAGGT
TCTAGAATGATGCATCAAATGTGTGCAACTCTACTACACAGTGCAGGCATTGTTGCACCATGTA
TACCAATTTAATGCCAGCAGATAAAAGATTCCATAAGAGGTAGTCAGATAGAGTATTTTATCAA
TTTAGTACACAGAAATCAACCGGAAAAGTGAGCACGCTCACCAATAGGTTCCAGCTCCCTGAGA
AGTCAGTTCCATTCCCTGAGACCCAACATCATCCTCCACTATCTTGCTGAGGCCAAAGTCTGTA
ACTTTTGCAACACCAACCTCATCGAAGAGAACATTGCCTGGTTTGAGATCATAGTGAATGATCT
TTTGAGTTCTCTTGTTAAGATAAACTAGGCCTTGAAATATTTGGACAATTATGATTCTCGCTTC
CTTTTCTGGAAGAATCGGTGTTGCTTTAAGGACTGCATCAAGATCTTTGC
Conservation Information
Conserved circRNAs osi_circ_005107* osi_circ_013652
PMCS 0.425251699
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA