Detail information of 5_circ_ag.6


General Information
CircRNA Name 5_circ_ag.6
ID in PlantcircBase ath_circ_039317
Alias 5:6683519-6688150
Organism Arabidpsis thaliana
Position chr5: 6683519-6688150  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G19770_circ_g.4 5_circ_ag.5 5_circ_ag.7 AT5G19770_circ_g.8 AT5G19770_circ_g.9 AT5G19770_circ_g.10 AT5G19780_circ_g.1 AT5G19780_circ_g.2 AT5G19780_circ_g.3 AT5G19780_circ_g.4
Support reads 3/1/2/1
Tissues root;leaf;flower
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACGCATTCCCTTCTTGAACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGA
CATTTGCCGCAGATCCCTAGATATCGAGAGGCCAACctgttcaagtttgtgtaggttggcctct
cgatatctagggatctgcggcaaatgtcatagatggcttcgttatccaagaggacagctacatc
cgtatgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTCAAGTTTGTGTAGGTTGGCCTCTCGATATCTAGGGATCTGCGGCAAATGTCATAGATGG
CTTCGTTATCCAAGAGGACAGCTACATCCGTATGTTCAAGAAGGGAATGCGTTGAGAGAACACT
GTTGTAAGGTTCTACAACAGCAGTAGAAACCTGACATCACAGAGGAATATGCATTAAAACCAAG
TTTCATCCAAATTAGACCACTATAGAAACATGTCATGTAAGAGTTTCTACTTCAGTGTCTAGCA
AAAGAAAGAGTACCTGAGGAGAAGGGTATATGGTAAAACCAAGCTTAGACTTCTTTCCATAATC
TACAGACAAACGCTCTAGCAACAGAGAACCCAATCCAGAACCAGTTCCACCACCAACAGCATTG
AACACCAAAAACCCTTGTAAGCCAGTACAGTTGTCGGCAAGTTTCCTCACACGGTCAAGACATA
GATCCACAATTTCCTTCCCAACTGCAATTACAAGAAGCATTCTAAGGACCATTTCAAAAACCCT
AACAAGTTAGAACAAGCAGAAAGTGGATTCTCACCAGTGTAATGTCCTCTAGCGAAGTTGTTAG
CAGCATCTTCTTTCCCAGAAATGAGCTGCTCTGGATGGAAAAGTTGACGGTAAGTACCAGTACG
AACTTCGTCGATAACGGTAGGCTCGAGATCAACGAAGACAGCCCTAGGGACATGCTTCCCAGCA
CCAGTCTCGCTAAAGAAAGTATTGAACGCATCGTGTGCAACACCAACTGTAGTATCACTGCAAC
AACGCAAAAGACTCGTATCTCAAAAATCTTCCGATCCACAGAAACAGAGTACAAAGAGTGAATT
AGGGTTTATACCTCGGCATCATTCCGTCCGGCTGGATTCCATGTTCGAGACAGTAAAGCTCCCA
ACACGAATTTCCGACCTGGATCCCAGCTTGTCCGATGTGAATGCTTATGATTTCTCGCATCTTC
TCTCAGTAGAAACCCTAATTTCGAGCGATTCGCTTCTTCGACGGACGGAGAATTGAGGAAATGA
GAGCGGTGAGCGAGATCTTCTTTTTTTCCTAATTTCCATGATTTTTGTGGGAAATTGATTATTT
ATTGAATGAGATTTGATAATTGGTTGGGGTCCGCCAAGTTGTGACAGCCTGCCTTTGGGACTGG
GCATAGACAAAATACGTGAGATTCGATCTGGATCTAGATCTGGAAGGTGTCGATTTTTATCCGG
TTTAAATAACTTACCGGAATTTAGGTATTTCGTTAGTATGAGTGAGGTAAATAATAGCTTAACC
GACCTAAATCGATATTATAGGTTAAATTAGGGTTTAGTGGTTTAAATAACTATTGGTTATAGTA
GGATGTTTTTGTAAGCGCCAAACAGAAAAGAAACGTCATGTAAGGTTGTCTTTGTTATAAGATT
TTGATTCTCTTAGTGCATTTATTTATTAATTAACTTACATAAATATTGACTACGTAAAACGTGT
TTTCAAGATTTGAAATCACAAGTTCTGAGATAACCCCGTATAATCCTTTTAATGACATAAGTAG
GAGAATAAAAATTTGCAAAACTATAAATTTGTAGAATGAAAAATTGCATAATAAAACAAACAAA
TATATGTGTCTAAAATTAAATATACATATAATATGTATTTACATAATGAATTTTTATTTTTATT
TTCTATGAAGAAAACAAAAATTCTGTATTTTTGCGTTTTAATAAATATTATGTTAATTTTCTTA
ATTGGTAACATTCTTATATACTCGTATTAAAAAAATGTCATTTTGCAATTACGCGTATTACTAA
TCGGAGCCAAATATTTTTATATTTTTCAATGAGTGGATAAAGGTACGACCAAAATGATGGTTTG
ATAACCAAAATGATTGTAATGATACGAAAGATAAACTCATATAAATTGATCATTCTAAGATTGT
ATTGGATGAATTGAGATAGTCAGCTAGATTAATTCTCTAATTGCTAAGTTAAGTTAGATGAATT
GAGACAATCAGCTATATTAATTCTATATAGCATATTTTTCCTAAGCGGTTTCAGATTAAAGATG
TCAAAGTGGGTTAAGCAATTGTTTAGATATAATGGATCAAGATTTCAAGATAAACGATTATCAA
ATCCATTGAATTCATGCATGCGGTTAGGAAGATAGCTTAAGTAGCAATTCAATCCTATAAATAT
AATGTTTTAAGGGAATTTTCATCCATTCAAACTAACAAAAAGACAAAAAAATGCATGATCCTAA
AGCAATTGATAGTTAACCTTAAGACTAAAAAATTCCCAAAGAGAGTATACAGTAAAGTAGACAA
CGGTCGAGTGAAACCGTGAATCCGAAGAGAGTACATAACGGTCACAAAGTTTGCGAGTTTACAA
AAATGCTAGTTGATATGATTGGAAATGGGTTGGGTTAAGGAATTGTTTGATTAAATATGTCATC
AAGACAATTATTTCATATTTCCACATGACTTGGTTTGTTTATGAACACAAATAATGAATAGAGA
GATATATAACTATTACATAAATAGTTATTTAAATTTTTTGCATGTAATTTATTAAAACTTCAGT
TATGTATTGTGGTGGTTCTCATTCACACAATATCATGAAAATGAATAGATTTCAGACTAGGGAC
AAATCTTTTTACTTTACATTCAATATCCTAAGAACATTCCCAAATCGTTTTAAGAAAGGGAACA
AAACAATTGCAGAGGATTTGAGGAAGATGAAGTAGAATGTGGATGTGAGAACCCTTACATCTCC
AAGAAACACTAAACAATACTAATAATCTACTCATTCATAGGTTTACATTATTTTCTTTTCTGCA
CATAAGTTTACATGATTACATCCATTTGATCTCACTCCCGTTAGGTGCCGACTGCCGACCCAAT
AACTTCACATAATCTTATACATATATTATTGAGAGGTTCATATTATTTTTACTAGTATATATAA
TCGAATGACCCTGTATATTTTCATTTGTGCACCCACTTTTTTTTTGTTTCCACCTAATCAATTT
TTTGATTAAAAACCATTAAATACCAAAGAGTTGTCCATTATGTTTTTTTTTGGTGTTTTAAATG
TCCATCCATAATTATTAATTCATAAAGCATATCACTAAATAAAATTGATGATATAAAAACAACT
ATAGTATGATCATGACCAATAGTTTTATGTGACTTTTGTCATTATGTAGATCAACACAACTGAA
TCTGTTAAAACGTGTTCAAAAAAAAAAAAATTGTAGAATCTGTTTGAACAAACAATAATGAAAA
AAACATTGAACCGGATCGATAAACCAATCCACGATTCGATCCTATATCCTAAATTGACGTAAAC
CAATCCGGTCCATAACAATAAGTAACATGTATCCGCCGAAGATATTTATGCCAGCCAAAATTGA
GAAACTGTAGAATGAACTGGATCGTGTGGGCAATATTGTAAAATGAACTCATTTTCGAACAAAA
GCGAAGCCGTGGGACCCAAGGCAGGCTGTCACAAAATGGCGGACCCCAACAAATTATCAAATCC
AATTCAATAAATTAATCATTTTCCCTTCACAAAATATAAACCTAATTTGCCAACGAAGTTGAAC
CAAAAAAAGAAGATCTCACTCTCACCGCCTTCATTTCCTCGATCTCCGTCTTCCTCCTTCTCCG
TCTGTCGCAGAGCATCGCTCGAATTAGGGTTTCTGCTGAGAGAAGATGAGGGAAATTATTAGCA
TTCATATCGGACAAGCCGGGATCCAAGTCGGAAATTCCTGCTGGGAGCTTTACTGTCTCGAACA
TGGAATCCAGCCCGACGGAATGATGCCGAGGTATAAACCCTAATTCTCTCTTTTATACTCTGTT
TCTGTGGATCTGAAGGTTTTTGAGAGACGAATGTTTTGCTCTGTTGCAGTGATACTACAGTTGG
TGTTGCACACGATGCGTTCAATACTTTCTTTAGCGAGACTGGAGCTGGGAAGCATGTTCCTAGG
GCTGTCTTCGTTGATCTCGAGCCTACCGTTATCGACGAAGTTCGTACTGGTACTTACCGTCAAC
TTTTCCATCCAGAGCAGCTCATTTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACA
TTACACTGGTGAGAATCCACTTTCTGCTTGTTCTAACTTGTTAGGGTTTTTGAAATGGTCCTTA
GAATGCTTCTTGTAATTGCAGTTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAA
GCTTGCCGACAACTGTACTGGCTTACAAGGGTTTTTGGTGTTCAATGCTGTTGGTGGTGGAACT
GGTTCTGGATTGGGTTCTCTGTTGCTAGAGCGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGC
TTGGTTTTACCATATACCCTTCTCCTCAGGTACTCTTTCTTTTGCTAGACACTGAAGTAGAACC
TCTTACATGACATGTTTCTATAGTGGTCTAATTTGGATGAAACTTGGTTTTAATGCATATTCCT
CTGTGATGTCAGGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCCC
TTCTTGAACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCGCAG
ATCCCTAGATATCGAGAGGCCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.324430583
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020