Detail information of 5_circ_ag.7


General Information
CircRNA Name 5_circ_ag.7
ID in PlantcircBase ath_circ_039318
Alias 5:6683537-6688168
Organism Arabidpsis thaliana
Position chr5: 6683537-6688168  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G19770_circ_g.4 5_circ_ag.5 5_circ_ag.6 AT5G19770_circ_g.8 AT5G19770_circ_g.9 AT5G19770_circ_g.10 AT5G19780_circ_g.1 AT5G19780_circ_g.2 AT5G19780_circ_g.3 AT5G19780_circ_g.4
Support reads 1/1/3/1
Tissues root;leaf;flower
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCGCAGATCCCT
AGATATCGAGAGGCCAACCTACACAAACTTGAACAGgttggcctctcgatatctagggatctgc
ggcaaatgtcatagatggcttcgttatccaagaggacagctacatccgtatgttcaagaaggga
atgcgttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGCCTCTCGATATCTAGGGATCTGCGGCAAATGTCATAGATGGCTTCGTTATCCAAGAGGA
CAGCTACATCCGTATGTTCAAGAAGGGAATGCGTTGAGAGAACACTGTTGTAAGGTTCTACAAC
AGCAGTAGAAACCTGACATCACAGAGGAATATGCATTAAAACCAAGTTTCATCCAAATTAGACC
ACTATAGAAACATGTCATGTAAGAGTTTCTACTTCAGTGTCTAGCAAAAGAAAGAGTACCTGAG
GAGAAGGGTATATGGTAAAACCAAGCTTAGACTTCTTTCCATAATCTACAGACAAACGCTCTAG
CAACAGAGAACCCAATCCAGAACCAGTTCCACCACCAACAGCATTGAACACCAAAAACCCTTGT
AAGCCAGTACAGTTGTCGGCAAGTTTCCTCACACGGTCAAGACATAGATCCACAATTTCCTTCC
CAACTGCAATTACAAGAAGCATTCTAAGGACCATTTCAAAAACCCTAACAAGTTAGAACAAGCA
GAAAGTGGATTCTCACCAGTGTAATGTCCTCTAGCGAAGTTGTTAGCAGCATCTTCTTTCCCAG
AAATGAGCTGCTCTGGATGGAAAAGTTGACGGTAAGTACCAGTACGAACTTCGTCGATAACGGT
AGGCTCGAGATCAACGAAGACAGCCCTAGGGACATGCTTCCCAGCACCAGTCTCGCTAAAGAAA
GTATTGAACGCATCGTGTGCAACACCAACTGTAGTATCACTGCAACAACGCAAAAGACTCGTAT
CTCAAAAATCTTCCGATCCACAGAAACAGAGTACAAAGAGTGAATTAGGGTTTATACCTCGGCA
TCATTCCGTCCGGCTGGATTCCATGTTCGAGACAGTAAAGCTCCCAACACGAATTTCCGACCTG
GATCCCAGCTTGTCCGATGTGAATGCTTATGATTTCTCGCATCTTCTCTCAGTAGAAACCCTAA
TTTCGAGCGATTCGCTTCTTCGACGGACGGAGAATTGAGGAAATGAGAGCGGTGAGCGAGATCT
TCTTTTTTTCCTAATTTCCATGATTTTTGTGGGAAATTGATTATTTATTGAATGAGATTTGATA
ATTGGTTGGGGTCCGCCAAGTTGTGACAGCCTGCCTTTGGGACTGGGCATAGACAAAATACGTG
AGATTCGATCTGGATCTAGATCTGGAAGGTGTCGATTTTTATCCGGTTTAAATAACTTACCGGA
ATTTAGGTATTTCGTTAGTATGAGTGAGGTAAATAATAGCTTAACCGACCTAAATCGATATTAT
AGGTTAAATTAGGGTTTAGTGGTTTAAATAACTATTGGTTATAGTAGGATGTTTTTGTAAGCGC
CAAACAGAAAAGAAACGTCATGTAAGGTTGTCTTTGTTATAAGATTTTGATTCTCTTAGTGCAT
TTATTTATTAATTAACTTACATAAATATTGACTACGTAAAACGTGTTTTCAAGATTTGAAATCA
CAAGTTCTGAGATAACCCCGTATAATCCTTTTAATGACATAAGTAGGAGAATAAAAATTTGCAA
AACTATAAATTTGTAGAATGAAAAATTGCATAATAAAACAAACAAATATATGTGTCTAAAATTA
AATATACATATAATATGTATTTACATAATGAATTTTTATTTTTATTTTCTATGAAGAAAACAAA
AATTCTGTATTTTTGCGTTTTAATAAATATTATGTTAATTTTCTTAATTGGTAACATTCTTATA
TACTCGTATTAAAAAAATGTCATTTTGCAATTACGCGTATTACTAATCGGAGCCAAATATTTTT
ATATTTTTCAATGAGTGGATAAAGGTACGACCAAAATGATGGTTTGATAACCAAAATGATTGTA
ATGATACGAAAGATAAACTCATATAAATTGATCATTCTAAGATTGTATTGGATGAATTGAGATA
GTCAGCTAGATTAATTCTCTAATTGCTAAGTTAAGTTAGATGAATTGAGACAATCAGCTATATT
AATTCTATATAGCATATTTTTCCTAAGCGGTTTCAGATTAAAGATGTCAAAGTGGGTTAAGCAA
TTGTTTAGATATAATGGATCAAGATTTCAAGATAAACGATTATCAAATCCATTGAATTCATGCA
TGCGGTTAGGAAGATAGCTTAAGTAGCAATTCAATCCTATAAATATAATGTTTTAAGGGAATTT
TCATCCATTCAAACTAACAAAAAGACAAAAAAATGCATGATCCTAAAGCAATTGATAGTTAACC
TTAAGACTAAAAAATTCCCAAAGAGAGTATACAGTAAAGTAGACAACGGTCGAGTGAAACCGTG
AATCCGAAGAGAGTACATAACGGTCACAAAGTTTGCGAGTTTACAAAAATGCTAGTTGATATGA
TTGGAAATGGGTTGGGTTAAGGAATTGTTTGATTAAATATGTCATCAAGACAATTATTTCATAT
TTCCACATGACTTGGTTTGTTTATGAACACAAATAATGAATAGAGAGATATATAACTATTACAT
AAATAGTTATTTAAATTTTTTGCATGTAATTTATTAAAACTTCAGTTATGTATTGTGGTGGTTC
TCATTCACACAATATCATGAAAATGAATAGATTTCAGACTAGGGACAAATCTTTTTACTTTACA
TTCAATATCCTAAGAACATTCCCAAATCGTTTTAAGAAAGGGAACAAAACAATTGCAGAGGATT
TGAGGAAGATGAAGTAGAATGTGGATGTGAGAACCCTTACATCTCCAAGAAACACTAAACAATA
CTAATAATCTACTCATTCATAGGTTTACATTATTTTCTTTTCTGCACATAAGTTTACATGATTA
CATCCATTTGATCTCACTCCCGTTAGGTGCCGACTGCCGACCCAATAACTTCACATAATCTTAT
ACATATATTATTGAGAGGTTCATATTATTTTTACTAGTATATATAATCGAATGACCCTGTATAT
TTTCATTTGTGCACCCACTTTTTTTTTGTTTCCACCTAATCAATTTTTTGATTAAAAACCATTA
AATACCAAAGAGTTGTCCATTATGTTTTTTTTTGGTGTTTTAAATGTCCATCCATAATTATTAA
TTCATAAAGCATATCACTAAATAAAATTGATGATATAAAAACAACTATAGTATGATCATGACCA
ATAGTTTTATGTGACTTTTGTCATTATGTAGATCAACACAACTGAATCTGTTAAAACGTGTTCA
AAAAAAAAAAAATTGTAGAATCTGTTTGAACAAACAATAATGAAAAAAACATTGAACCGGATCG
ATAAACCAATCCACGATTCGATCCTATATCCTAAATTGACGTAAACCAATCCGGTCCATAACAA
TAAGTAACATGTATCCGCCGAAGATATTTATGCCAGCCAAAATTGAGAAACTGTAGAATGAACT
GGATCGTGTGGGCAATATTGTAAAATGAACTCATTTTCGAACAAAAGCGAAGCCGTGGGACCCA
AGGCAGGCTGTCACAAAATGGCGGACCCCAACAAATTATCAAATCCAATTCAATAAATTAATCA
TTTTCCCTTCACAAAATATAAACCTAATTTGCCAACGAAGTTGAACCAAAAAAAGAAGATCTCA
CTCTCACCGCCTTCATTTCCTCGATCTCCGTCTTCCTCCTTCTCCGTCTGTCGCAGAGCATCGC
TCGAATTAGGGTTTCTGCTGAGAGAAGATGAGGGAAATTATTAGCATTCATATCGGACAAGCCG
GGATCCAAGTCGGAAATTCCTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGG
AATGATGCCGAGGTATAAACCCTAATTCTCTCTTTTATACTCTGTTTCTGTGGATCTGAAGGTT
TTTGAGAGACGAATGTTTTGCTCTGTTGCAGTGATACTACAGTTGGTGTTGCACACGATGCGTT
CAATACTTTCTTTAGCGAGACTGGAGCTGGGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTC
GAGCCTACCGTTATCGACGAAGTTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCAGC
TCATTTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGGTGAGAATCC
ACTTTCTGCTTGTTCTAACTTGTTAGGGTTTTTGAAATGGTCCTTAGAATGCTTCTTGTAATTG
CAGTTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCGACAACTGTAC
TGGCTTACAAGGGTTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCT
CTGTTGCTAGAGCGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACC
CTTCTCCTCAGGTACTCTTTCTTTTGCTAGACACTGAAGTAGAACCTCTTACATGACATGTTTC
TATAGTGGTCTAATTTGGATGAAACTTGGTTTTAATGCATATTCCTCTGTGATGTCAGGTTTCT
ACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCCCTTCTTGAACATACCGATG
TAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCGCAGATCCCTAGATATCGAGAG
GCCAACCTACACAAACTTGAACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.328752681
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020