Detail information of Os03g0227800_circ_g.42


General Information
CircRNA Name Os03g0227800_circ_g.42
ID in PlantcircBase osa_circ_018692
Alias NA
Organism Oryza sativa
Position chr3: 6755234-6755534  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os03g0227800
Parent gene annotation Conserved hypothetical protein. (Os03t0227800-01);Similar to cDN
A clone:001-004-G07, full insert sequence. (Os03t0227800-02);Sim
ilar to cDNA clone:001-042-G02, full insert sequence. (Os03t0227
800-03)
Parent gene strand +
Alternative splicing Os03g0227800_circ_g.2 Os03g0227800_circ_g.3 Os03g0227800_circ_g.4 Os03g0227800_circ_g.5 Os03g0227800_circ_g.6 Os03g0227800_circ_g.7 Os03g0227800_circ_g.8 Os03g0227800_circ_g.9 Os03g0227800_circ_g.10 Os03g0227800_circ_g.11 Os03g0227800_circ_g.12 Os03g0227800_circ_g.13 Os03g0227800_circ_g.14 Os03g0227800_circ_g.15 Os03g0227800_circ_g.16 Os03g0227800_circ_g.17 Os03g0227800_circ_g.18 Os03g0227800_circ_g.19 Os03g0227800_circ_g.20 Os03g0227800_circ_g.21 Os03g0227800_circ_g.22 Os03g0227800_circ_g.23 Os03g0227800_circ_g.24 Os03g0227800_circ_g.25 Os03g0227800_circ_g.26 Os03g0227800_circ_g.27 Os03g0227800_circ_g.28 Os03g0227800_circ_g.29 Os03g0227800_circ_g.30 Os03g0227800_circ_g.31 Os03g0227800_circ_g.32 Os03g0227800_circ_g.33 Os03g0227800_circ_g.34 Os03g0227800_circ_g.35 Os03g0227800_circ_g.36 Os03g0227800_circ_g.37 Os03g0227800_circ_g.38 Os03g0227800_circ_g.39 Os03g0227800_circ_g.40 Os03g0227800_circ_g.41 Os03g0227800_circ_g.43 Os03g0227800_circ_g.44 Os03g0227800_circ_g.45 Os03g0227800_circ_g.46 Os03g0227800_circ_g.47 Os03g0227800_circ_g.48 Os03g0227800_circ_g.49
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TT-AG
Number of exons covered Os03t0227800-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCATCTCACATATTGACTCAAGTTGATTAAAGTTACGCTTGGTAATTGGTTTAAGAGCAGCTG
GAATACTACGCAATTGTTCTAACGAATATCTAGTACgtacaaaagataatctacatgtgcaata
ttagtcgtaatcaaatttccatatcattcagcgtttcataattatcactgccttaaaatatccc
tagtcaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACAAAAGATAATCTACATGTGCAATATTAGTCGTAATCAAATTTCCATATCATTCAGCGTTT
CATAATTATCACTGCCTTAAAATATCCCTAGTCACATAATATTCCTGGATTTACTTTAAATTGC
TTGAATTACTTAATTATTATTATCATTGCCAATTAATATCCCTGATAAACAGCAGTATTATCAT
CCCTAGAAGTGCATCTCACATATTGACTCAAGTTGATTAAAGTTACGCTTGGTAATTGGTTTAA
GAGCAGCTGGAATACTACGCAATTGTTCTAACGAATATCTAGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.124861157
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017