Detail information of Os03g0227800_circ_g.48


General Information
CircRNA Name Os03g0227800_circ_g.48
ID in PlantcircBase osa_circ_041288
Alias NA
Organism Oryza sativa
Position chr3: 6755243-6756034  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRI-long
Parent gene Os03g0227800
Parent gene annotation Conserved hypothetical protein. (Os03t0227800-01);Similar to cDN
A clone:001-004-G07, full insert sequence. (Os03t0227800-02);Sim
ilar to cDNA clone:001-042-G02, full insert sequence. (Os03t0227
800-03)
Parent gene strand +
Alternative splicing Os03g0227800_circ_g.2 Os03g0227800_circ_g.3 Os03g0227800_circ_g.4 Os03g0227800_circ_g.5 Os03g0227800_circ_g.6 Os03g0227800_circ_g.7 Os03g0227800_circ_g.8 Os03g0227800_circ_g.9 Os03g0227800_circ_g.10 Os03g0227800_circ_g.11 Os03g0227800_circ_g.12 Os03g0227800_circ_g.13 Os03g0227800_circ_g.14 Os03g0227800_circ_g.15 Os03g0227800_circ_g.16 Os03g0227800_circ_g.17 Os03g0227800_circ_g.18 Os03g0227800_circ_g.19 Os03g0227800_circ_g.20 Os03g0227800_circ_g.21 Os03g0227800_circ_g.22 Os03g0227800_circ_g.23 Os03g0227800_circ_g.24 Os03g0227800_circ_g.25 Os03g0227800_circ_g.26 Os03g0227800_circ_g.27 Os03g0227800_circ_g.28 Os03g0227800_circ_g.29 Os03g0227800_circ_g.30 Os03g0227800_circ_g.31 Os03g0227800_circ_g.32 Os03g0227800_circ_g.33 Os03g0227800_circ_g.34 Os03g0227800_circ_g.35 Os03g0227800_circ_g.36 Os03g0227800_circ_g.37 Os03g0227800_circ_g.38 Os03g0227800_circ_g.39 Os03g0227800_circ_g.40 Os03g0227800_circ_g.41 Os03g0227800_circ_g.42 Os03g0227800_circ_g.43 Os03g0227800_circ_g.44 Os03g0227800_circ_g.45 Os03g0227800_circ_g.46 Os03g0227800_circ_g.47 Os03g0227800_circ_g.49
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0227800-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTCCTCCTTAGCATTATGTTAGTTTCTGTACGTTGAAGTACGAGAATTTATGTTCTTGAAGCA
AAAAGTTATTTAGCATTTGTCTATTCATCATAGTTTataatctacatgtgcaatattagtcgta
atcaaatttccatatcattcagcgtttcataattatcactgccttaaaatatccctagtcacat
aatattcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 792
Transcript exons: 6755243-6756034
ATAATCTACATGTGCAATATTAGTCGTAATCAAATTTCCATATCATTCAGCGTTTCATAATTAT
CACTGCCTTAAAATATCCCTAGTCACATAATATTCCTGGATTTACTTTAAATTGCTTGAATTAC
TTAATTATTATTATCATTGCCAATTAATATCCCTGATAAACAGCAGTATTATCATCCCTAGAAG
TGCATCTCACATATTGACTCAAGTTGATTAAAGTTACGCTTGGTAATTGGTTTAAGAGCAGCTG
GAATACTACGCAATTGTTCTAACGAATATCTAGTACTTGCTTTGTATACTTAAATATATCCATA
AGTCGGTGTAGTGGTAATATTTGCTTCCGAGATTATGTGCTCAGCTATACTCCGAACTGTCAAC
TATCAGTTTGGAAGTATGTTATGTTGGTCAAATACTATTATGATGTTTCCAGCATACGATTGGA
GAACTCTTGTCCAATTTAAGTGAAATAAGCTCTTGTTCTTGCCCAGAATTTACAGCGCTCCTGC
GCCTTAATATCAACTAATTGTGTATGATTTAACCGCTCAGCTCTTTCACTTTGCCCTTTCTGTA
TTTATGCATGTACGAGAAGGCTAGTAATGTTTTATATATTTGCACTGTGAGAATTTCTTTTCTT
GGATAGTCAGCAATGTAACCTCTTTTGCAAGCTGTAGAATATGATCATATGTTGTCCTCCTTAG
CATTATGTTAGTTTCTGTACGTTGAAGTACGAGAATTTATGTTCTTGAAGCAAAAAGTTATTTA
GCATTTGTCTATTCATCATAGTTT

Genomic sequence ATAATCTACATGTGCAATATTAGTCGTAATCAAATTTCCATATCATTCAGCGTTTCATAATTAT
CACTGCCTTAAAATATCCCTAGTCACATAATATTCCTGGATTTACTTTAAATTGCTTGAATTAC
TTAATTATTATTATCATTGCCAATTAATATCCCTGATAAACAGCAGTATTATCATCCCTAGAAG
TGCATCTCACATATTGACTCAAGTTGATTAAAGTTACGCTTGGTAATTGGTTTAAGAGCAGCTG
GAATACTACGCAATTGTTCTAACGAATATCTAGTACTTGCTTTGTATACTTAAATATATCCATA
AGTCGGTGTAGTGGTAATATTTGCTTCCGAGATTATGTGCTCAGCTATACTCCGAACTGTCAAC
TATCAGTTTGGAAGTATGTTATGTTGGTCAAATACTATTATGATGTTTCCAGCATACGATTGGA
GAACTCTTGTCCAATTTAAGTGAAATAAGCTCTTGTTCTTGCCCAGAATTTACAGCGCTCCTGC
GCCTTAATATCAACTAATTGTGTATGATTTAACCGCTCAGCTCTTTCACTTTGCCCTTTCTGTA
TTTATGCATGTACGAGAAGGCTAGTAATGTTTTATATATTTGCACTGTGAGAATTTCTTTTCTT
GGATAGTCAGCAATGTAACCTCTTTTGCAAGCTGTAGAATATGATCATATGTTGTCCTCCTTAG
CATTATGTTAGTTTCTGTACGTTGAAGTACGAGAATTTATGTTCTTGAAGCAAAAAGTTATTTA
GCATTTGTCTATTCATCATAGTTT
Conservation Information
Conserved circRNAs osi_circ_014087
PMCS 0.101535953
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study