Detail information of AT1G77300_circ_g.8


General Information
CircRNA Name AT1G77300_circ_g.8
ID in PlantcircBase ath_circ_010608
Alias At_ciR5549
Organism Arabidpsis thaliana
Position chr1: 29043620-29044865  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G77300
Parent gene annotation histone methyltransferases(H3-K4 specific);histone methyltransfe
rases(H3-K36 specific)
Parent gene strand -
Alternative splicing AT1G77300_circ_g.1 AT1G77300_circ_g.2 AT1G77300_circ_g.3 AT1G77300_circ_g.4 AT1G77300_circ_g.5 AT1G77300_circ_g.6 AT1G77300_circ_g.7 AT1G77300_circ_g.9 AT1G77300_circ_g.10
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G77300.2:4
AT1G77300.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTACCTTGAAGACATTCAATGTTAAGCATTCTATTGAGGCATTCTTCTCCACAACCCAACCT
ACCATCAGGTGATGGTTTGCAGTGACAAACCATTATcttttcagtacggcagtttggttcacag
ctatggttaatgaaacgccctaggtttccctttgcaccagcatctattacctgcgttaaaaaaa
ttaaagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTCAGTACGGCAGTTTGGTTCACAGCTATGGTTAATGAAACGCCCTAGGTTTCCCTTTGCA
CCAGCATCTATTACCTGCGTTAAAAAAATTAAAGAAGTTATTGCAAGGTCCAATTTAGAGCATA
TTCTAAAGTATGCACAAAAAGGGGAAAATTTCAACCGAGTGCAGATAATATGCTAGGGATGCGA
TTATTACAAACAAGTAACCTATCTGTGCATAGGCAAGTTAGATAAATGTCCAAAACCCTCATAA
GCTTTTGCGCTAAACTAGTTGGGACATTTTAATCTGTTACCTTTAAAGCTTACATAAAGATAGA
TACTGATAAAGATACAGACGAGTGTCAGATGAAGGAAGATACAGAGAGAAGAAGACTGTCTATT
CATCTTACTCTTGCAAATGTCTTTTTTCTTTTTTGGGTACACATGGATCAAATAAGAGACATAA
AAGTAACTAACCCGAGCTACAAGCAAATTGCTCAAGCAGAAAAGGTTTAAAAAGATAGAACTTC
ATATATGCTATCTAAAATCAAAAACGCGACACGGTCTGGCAACCATACATCACTTTTAGTATCC
ATCACACATTTTTATACAACAACTCCACACAGCTTTAAACAGCAAATTACAAACCATTTTAATC
AAAGATGAAGAAAAAGAAGCAGCTGAGTCATTAAAAGAGAAGATGATTACCTCATTCCCATTTA
GTGTCATGAAATAGAAATGTTTCTGACCCTTGAAAGCATATTCTTTTTGGCGAGTCTCATAGGA
TTGCATATCAAGCACCTGTTATAAATAAACACAAGTTATACGCATGTATTAATAAAACACACAG
ATAAGGAAAAAAATAGAGGCTGAAAAAGCCAATCTACAGTTGATCACATCCACCAAGAGTTGAA
AGATCATTTCAAACACACCTCTCCAACATATTCAATTAGGAATTGCCCCTCTCGTACATCCTCG
AGCAATCTCAGGCCATAACCCTTCTTACCGGATTGGAATCTCTCAAACTTAACATACTTCCGTT
TTTGAAACTGCAGAAATATGAGCCAAAAGATTGAGAATGATATAACTGACTGTGAATGTAACCC
TTTCGCTTGCAAACAAGACATTATACCTGCTGATTTGAACACAAATCGCCAGCTGGACAGGTAC
CTTGAAGACATTCAATGTTAAGCATTCTATTGAGGCATTCTTCTCCACAACCCAACCTACCATC
AGGTGATGGTTTGCAGTGACAAACCATTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.148348273
Functional Information
Coding potential Y
Potential coding position 29044863-29043622(-)
Potential amino acid sequence MVCHCKPSPDGRLGCGEECLNRMLNIECLQGTCPAGDLCSNQQFQKRKYVKFERFQSGKKGYGL
RLLEDVREGQFLIEYVGEVLDMQSYETRQKEYAFKGQKHFYFMTLNGNEVIDAGAKGNLGRFIN
HSCEPNCRTEKIMVCHCKPSPDGRLGCGEECLNRMLNIECLQGTCPAGDLCSNQQFQKRKYVKF
ERFQSGKKGYGLRLLEDVREGQFLIEYVGEVLDMQSYETRQKEYAFKGQKHFYFMTLNGNEVID
AGAKGNLGRFINHSCEPNCRTEKIMVCHCKPSPDGRLGCGEECLNRMLNIECLQGTCPAGDLCS
NQQFQKRKYVKFERFQSGKKGYGLRLLEDVREGQFLIEYVGEVLDMQSYETRQKEYAFKGQKHF
YFMTLNGNEVIDAGAKGNLGRFINHSCEPNCRTEKIMVCHCKPSPDGRLGCGEECLNRMLNIEC
LQGTCPAGDLCSNQQFQKRKYVKFERFQSGKKGYGLRLLEDVREGQFLIEYVGEVLDMQSYETR
QKEYAFKGQKHFYFMTLNGNEVIDAGAKGNLGRFINHSCEPNCRTEK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015