Plant Circular RNA Database

Detail information of AT1G77300_circ_g.6

			
						 General Information
					
						CircRNA Name
						AT1G77300_circ_g.6
					
						ID in PlantcircBase
						ath_circ_010606
					
						Alias
						At_ciR5532, Ath_circ_FC1042, Ath_circ_FC1043
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 29042200-29046153  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							AT1G77300						
					
						Parent gene annotation
						
							histone methyltransferases(H3-K4 specific);histone methyltransfe
rases(H3-K36 specific)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT1G77300_circ_g.1 AT1G77300_circ_g.2 AT1G77300_circ_g.3 AT1G77300_circ_g.4 AT1G77300_circ_g.5 AT1G77300_circ_g.7 AT1G77300_circ_g.8 AT1G77300_circ_g.9 AT1G77300_circ_g.10 						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G77300.1:11
AT1G77300.2:11

General Information
CircRNA Name	AT1G77300_circ_g.6
ID in PlantcircBase	ath_circ_010606
Alias	At_ciR5532, Ath_circ_FC1042, Ath_circ_FC1043
Organism	Arabidpsis thaliana
Position	chr1: 29042200-29046153 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ
Parent gene	AT1G77300
Parent gene annotation	histone methyltransferases(H3-K4 specific);histone methyltransfe rases(H3-K36 specific)
Parent gene strand	-
Alternative splicing	AT1G77300_circ_g.1 AT1G77300_circ_g.2 AT1G77300_circ_g.3 AT1G77300_circ_g.4 AT1G77300_circ_g.5 AT1G77300_circ_g.7 AT1G77300_circ_g.8 AT1G77300_circ_g.9 AT1G77300_circ_g.10
Support reads	2
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G77300.1:11 AT1G77300.2:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCAATAGTAACATCCACAACCATTTCCCCATGGGTCACATCTGATGATATGGTACCATAAGTGG
CACTGGTTTTCCCAATATCAGCATCTAGAAGGGCACctataaattccttcttcatccgtgcctc
gcgaagcggcagtgagcagcagaagtttcaagtagccttttgctgaatcctgtttgtgtaagaa
aagaaaac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTATAAATTCCTTCTTCATCCGTGCCTCGCGAAGCGGCAGTGAGCAGCAGAAGTTTCAAGTAGC
CTTTTGCTGAATCCTGTTTGTGTAAGAAAAGAAAACCAACTAAGTATGCACGCTGCGGTTGCTC
GATAAAGGGGAAGTATTAAGAATAAAGAGAGTTATGCCAAGGATGTATCAAGGAAAAAAAAGTG
CATGATCTTACAAACCCCACAAAAGAAAACAGAACGGAACAAAATATGATGTCTTAACCTTACA
AACATAACTAATTGAAGTGTAGACTAAGGAGCAATGCTATATACAACTTACCCTCCGCTTGCTT
ATCCCTCCTACGGCATCTAGTAACTCGTTCAGTTTCCCTTCAACTGCAAAATTGGTGGTGCTAT
TAGCGAATATGGCTGAATGGTGATGGTATCTTAACAATTCACGTCTAAAACTAGTACATTACAT
GTTTCGATACTGGGAGAAACTTTCTCTGATCCTTTAGATTTGATGGGCTGCTGTTGCAACTTAT
TAACTGGTATAACCTGTGCTTTGTTAACACCAGGATAAATACCTCCTTTGTCTCGCTTACTAGA
CTCAGATGAGCGAGAAGTTTTCATACGAGGACGAGGACGTGGAAGTATCTTTTTATCTTCTCCT
GATCCATGCTTTGTCGTCTTATCAGAATTTGTACCACCCGGGGACATTCTGCTAAGAGAACTGG
ACGTGGGAGATGTGCTTTTAGTCTTCTTTTCAGCGGGAACCTCTTGCTGGACAGCAGTAATAGA
TATGCCTGACGAAAGTTCCTTCAAAACTTCAGTTGGCTGAAGAAGAGGTGGAGGAATTTCTCTC
TCTGGAAGTTTTACAGATACTGAGCTCTGTGTTTGGGTATTATCAGGAGCAAGGTCCTTGTAAC
CATTAACCTTTTCAAAGCTCTGTGGCATTTGCTCGTCAGCGTCATCAGTGAAGGTCCTAGATGT
TGCACCTAAGATTCCTTCTCCACTTTCATCATCATCAAGGATCACAAGTTCAGGATACTCTTCA
TCTGAATCACTTTGAATAATTACATCACCATTCAGAGGATCTCCCCCAATATACCCTCTGCAAT
GTGATGATCCACAATAGCACTTTTTGGCGGCAGCACCAAAAACCCTCACATAGTTGTAGTCAAA
TGTCAACTCTTGACCCTGTGAACGAACCAGACAGATTAAAAACTACTGAAATGATACTCGCAGA
ATAGCAAGTGCAGGAGAGCCTACCTTCTTAAGGTCTTGCATGGAGAATATTCCAACGCAAATTT
CACCATTCACCATCCACTGCAACAACATTTAAGAAGTAACAAATGAAGCAGACGAGCTCAAAAA
GAAAGTTCCCGACTCAGATTACTGAATTTATAATCAGACCCGATGAATGATATCGCACAGAACA
CTTTGTAGTCACCTTTTCAGTACGGCAGTTTGGTTCACAGCTATGGTTAATGAAACGCCCTAGG
TTTCCCTTTGCACCAGCATCTATTACCTGCGTTAAAAAAATTAAAGAAGTTATTGCAAGGTCCA
ATTTAGAGCATATTCTAAAGTATGCACAAAAAGGGGAAAATTTCAACCGAGTGCAGATAATATG
CTAGGGATGCGATTATTACAAACAAGTAACCTATCTGTGCATAGGCAAGTTAGATAAATGTCCA
AAACCCTCATAAGCTTTTGCGCTAAACTAGTTGGGACATTTTAATCTGTTACCTTTAAAGCTTA
CATAAAGATAGATACTGATAAAGATACAGACGAGTGTCAGATGAAGGAAGATACAGAGAGAAGA
AGACTGTCTATTCATCTTACTCTTGCAAATGTCTTTTTTCTTTTTTGGGTACACATGGATCAAA
TAAGAGACATAAAAGTAACTAACCCGAGCTACAAGCAAATTGCTCAAGCAGAAAAGGTTTAAAA
AGATAGAACTTCATATATGCTATCTAAAATCAAAAACGCGACACGGTCTGGCAACCATACATCA
CTTTTAGTATCCATCACACATTTTTATACAACAACTCCACACAGCTTTAAACAGCAAATTACAA
ACCATTTTAATCAAAGATGAAGAAAAAGAAGCAGCTGAGTCATTAAAAGAGAAGATGATTACCT
CATTCCCATTTAGTGTCATGAAATAGAAATGTTTCTGACCCTTGAAAGCATATTCTTTTTGGCG
AGTCTCATAGGATTGCATATCAAGCACCTGTTATAAATAAACACAAGTTATACGCATGTATTAA
TAAAACACACAGATAAGGAAAAAAATAGAGGCTGAAAAAGCCAATCTACAGTTGATCACATCCA
CCAAGAGTTGAAAGATCATTTCAAACACACCTCTCCAACATATTCAATTAGGAATTGCCCCTCT
CGTACATCCTCGAGCAATCTCAGGCCATAACCCTTCTTACCGGATTGGAATCTCTCAAACTTAA
CATACTTCCGTTTTTGAAACTGCAGAAATATGAGCCAAAAGATTGAGAATGATATAACTGACTG
TGAATGTAACCCTTTCGCTTGCAAACAAGACATTATACCTGCTGATTTGAACACAAATCGCCAG
CTGGACAGGTACCTTGAAGACATTCAATGTTAAGCATTCTATTGAGGCATTCTTCTCCACAACC
CAACCTACCATCAGGTGATGGTTTGCAGTGACAAACCATTATCTGTCCAAAATAGAAGGGAACA
CGATAGCTGAGTAGTAATATAGAAAAGGAAAAAATAGTGACAGCACAAGTACAATTTCTACTAA
TGCATTACTGACATAACAAATAGGCAAAATACAAAGAAATTAACCTCGTCAATTGTTTGAGATT
TACGATTGCGATGAAGGAACTGGTTTGTTTTTATAGCCTTGAAGCACGCCTTTTGCTTACCTGC
AAAAATTACGGACATAAAAACAGATTAAAAATAAACAGATGGAAAATCATATGATAATTCAAAT
ATTCTAGCCAAGGGTACTCTCAAGGTTCCCCCATGTTGAATTATAAGAACCTGTCAAACGCTTG
CTCTTCTGTTCCTTTTCTTTCCCTCTTTTAGCCGCATCACAATCATATGCATCTGCTTCATCCT
GTCCTATGCCCAACTCTTCATTAATTTCTTCATTTGACATCTCTTGAGATTTTGAGCAATCCGC
AAATCTTTTATCTGAGTTGTTCATACAGATCCTTTTAACAATAGAAAATCCATATTAGTATAGA
GAAAGACTTCAACATATCACAAAAGATGAATGAAGCAGCACGTGCGGAAAGGATAAAAAATCAT
GGGTCAAACAGCTGCGGACAGGAAGTCCAAATGTGATGAATCAAAAAGATGAAAAAACTCCATG
CTGATTATAAATTTGAGACTCAATAGATAAACTAGGTTAACTTTGATACAAGTGCGACGAACAC
TAAGTTAACACAAATTTTGTATAGCCCAACAGGACTAACTATGATCCGCAACACACTGGAAACT
GTTGATAAAAAGAATAATCTACAAGAATTCGTAAGGGGAAACTACAAACAATTAGCCAGAACAG
TGTGTGGCCGAGATGAGGAGACGCTAATTTTAAGGCTAAACAAGCAAATTTCATGAACTTAAGT
AATCAAATACGAAGGCACTGTCCAGTAAAAGCTGGCCACATTCATCCCCAATTATGATCACATG
ACAAAGTAAACGAAAACTAAAAGAGGAGAACACTTAGAAAAACACAATCATCAAAAAATTTAAT
TAAAGCAAGCTCATATTCAATATAAAATGATACATACCATCTAGAGCTCTCGTCAATTGATCCT
ACAACAGAAGCAGGTATTCGTCGCCATTTAAAGCAATCATCACATCGAACCCAGGCACTCTCTG
TGGAATAGCTATCTTCAATAGTAACATCCACAACCATTTCCCCATGGGTCACATCTGATGATAT
GGTACCATAAGTGGCACTGGTTTTCCCAATATCAGCATCTAGAAGGGCAC
						
					

			
		

Sequences
Splice junction sequence	TCAATAGTAACATCCACAACCATTTCCCCATGGGTCACATCTGATGATATGGTACCATAAGTGG CACTGGTTTTCCCAATATCAGCATCTAGAAGGGCACctataaattccttcttcatccgtgcctc gcgaagcggcagtgagcagcagaagtttcaagtagccttttgctgaatcctgtttgtgtaagaa aagaaaac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTATAAATTCCTTCTTCATCCGTGCCTCGCGAAGCGGCAGTGAGCAGCAGAAGTTTCAAGTAGC CTTTTGCTGAATCCTGTTTGTGTAAGAAAAGAAAACCAACTAAGTATGCACGCTGCGGTTGCTC GATAAAGGGGAAGTATTAAGAATAAAGAGAGTTATGCCAAGGATGTATCAAGGAAAAAAAAGTG CATGATCTTACAAACCCCACAAAAGAAAACAGAACGGAACAAAATATGATGTCTTAACCTTACA AACATAACTAATTGAAGTGTAGACTAAGGAGCAATGCTATATACAACTTACCCTCCGCTTGCTT ATCCCTCCTACGGCATCTAGTAACTCGTTCAGTTTCCCTTCAACTGCAAAATTGGTGGTGCTAT TAGCGAATATGGCTGAATGGTGATGGTATCTTAACAATTCACGTCTAAAACTAGTACATTACAT GTTTCGATACTGGGAGAAACTTTCTCTGATCCTTTAGATTTGATGGGCTGCTGTTGCAACTTAT TAACTGGTATAACCTGTGCTTTGTTAACACCAGGATAAATACCTCCTTTGTCTCGCTTACTAGA CTCAGATGAGCGAGAAGTTTTCATACGAGGACGAGGACGTGGAAGTATCTTTTTATCTTCTCCT GATCCATGCTTTGTCGTCTTATCAGAATTTGTACCACCCGGGGACATTCTGCTAAGAGAACTGG ACGTGGGAGATGTGCTTTTAGTCTTCTTTTCAGCGGGAACCTCTTGCTGGACAGCAGTAATAGA TATGCCTGACGAAAGTTCCTTCAAAACTTCAGTTGGCTGAAGAAGAGGTGGAGGAATTTCTCTC TCTGGAAGTTTTACAGATACTGAGCTCTGTGTTTGGGTATTATCAGGAGCAAGGTCCTTGTAAC CATTAACCTTTTCAAAGCTCTGTGGCATTTGCTCGTCAGCGTCATCAGTGAAGGTCCTAGATGT TGCACCTAAGATTCCTTCTCCACTTTCATCATCATCAAGGATCACAAGTTCAGGATACTCTTCA TCTGAATCACTTTGAATAATTACATCACCATTCAGAGGATCTCCCCCAATATACCCTCTGCAAT GTGATGATCCACAATAGCACTTTTTGGCGGCAGCACCAAAAACCCTCACATAGTTGTAGTCAAA TGTCAACTCTTGACCCTGTGAACGAACCAGACAGATTAAAAACTACTGAAATGATACTCGCAGA ATAGCAAGTGCAGGAGAGCCTACCTTCTTAAGGTCTTGCATGGAGAATATTCCAACGCAAATTT CACCATTCACCATCCACTGCAACAACATTTAAGAAGTAACAAATGAAGCAGACGAGCTCAAAAA GAAAGTTCCCGACTCAGATTACTGAATTTATAATCAGACCCGATGAATGATATCGCACAGAACA CTTTGTAGTCACCTTTTCAGTACGGCAGTTTGGTTCACAGCTATGGTTAATGAAACGCCCTAGG TTTCCCTTTGCACCAGCATCTATTACCTGCGTTAAAAAAATTAAAGAAGTTATTGCAAGGTCCA ATTTAGAGCATATTCTAAAGTATGCACAAAAAGGGGAAAATTTCAACCGAGTGCAGATAATATG CTAGGGATGCGATTATTACAAACAAGTAACCTATCTGTGCATAGGCAAGTTAGATAAATGTCCA AAACCCTCATAAGCTTTTGCGCTAAACTAGTTGGGACATTTTAATCTGTTACCTTTAAAGCTTA CATAAAGATAGATACTGATAAAGATACAGACGAGTGTCAGATGAAGGAAGATACAGAGAGAAGA AGACTGTCTATTCATCTTACTCTTGCAAATGTCTTTTTTCTTTTTTGGGTACACATGGATCAAA TAAGAGACATAAAAGTAACTAACCCGAGCTACAAGCAAATTGCTCAAGCAGAAAAGGTTTAAAA AGATAGAACTTCATATATGCTATCTAAAATCAAAAACGCGACACGGTCTGGCAACCATACATCA CTTTTAGTATCCATCACACATTTTTATACAACAACTCCACACAGCTTTAAACAGCAAATTACAA ACCATTTTAATCAAAGATGAAGAAAAAGAAGCAGCTGAGTCATTAAAAGAGAAGATGATTACCT CATTCCCATTTAGTGTCATGAAATAGAAATGTTTCTGACCCTTGAAAGCATATTCTTTTTGGCG AGTCTCATAGGATTGCATATCAAGCACCTGTTATAAATAAACACAAGTTATACGCATGTATTAA TAAAACACACAGATAAGGAAAAAAATAGAGGCTGAAAAAGCCAATCTACAGTTGATCACATCCA CCAAGAGTTGAAAGATCATTTCAAACACACCTCTCCAACATATTCAATTAGGAATTGCCCCTCT CGTACATCCTCGAGCAATCTCAGGCCATAACCCTTCTTACCGGATTGGAATCTCTCAAACTTAA CATACTTCCGTTTTTGAAACTGCAGAAATATGAGCCAAAAGATTGAGAATGATATAACTGACTG TGAATGTAACCCTTTCGCTTGCAAACAAGACATTATACCTGCTGATTTGAACACAAATCGCCAG CTGGACAGGTACCTTGAAGACATTCAATGTTAAGCATTCTATTGAGGCATTCTTCTCCACAACC CAACCTACCATCAGGTGATGGTTTGCAGTGACAAACCATTATCTGTCCAAAATAGAAGGGAACA CGATAGCTGAGTAGTAATATAGAAAAGGAAAAAATAGTGACAGCACAAGTACAATTTCTACTAA TGCATTACTGACATAACAAATAGGCAAAATACAAAGAAATTAACCTCGTCAATTGTTTGAGATT TACGATTGCGATGAAGGAACTGGTTTGTTTTTATAGCCTTGAAGCACGCCTTTTGCTTACCTGC AAAAATTACGGACATAAAAACAGATTAAAAATAAACAGATGGAAAATCATATGATAATTCAAAT ATTCTAGCCAAGGGTACTCTCAAGGTTCCCCCATGTTGAATTATAAGAACCTGTCAAACGCTTG CTCTTCTGTTCCTTTTCTTTCCCTCTTTTAGCCGCATCACAATCATATGCATCTGCTTCATCCT GTCCTATGCCCAACTCTTCATTAATTTCTTCATTTGACATCTCTTGAGATTTTGAGCAATCCGC AAATCTTTTATCTGAGTTGTTCATACAGATCCTTTTAACAATAGAAAATCCATATTAGTATAGA GAAAGACTTCAACATATCACAAAAGATGAATGAAGCAGCACGTGCGGAAAGGATAAAAAATCAT GGGTCAAACAGCTGCGGACAGGAAGTCCAAATGTGATGAATCAAAAAGATGAAAAAACTCCATG CTGATTATAAATTTGAGACTCAATAGATAAACTAGGTTAACTTTGATACAAGTGCGACGAACAC TAAGTTAACACAAATTTTGTATAGCCCAACAGGACTAACTATGATCCGCAACACACTGGAAACT GTTGATAAAAAGAATAATCTACAAGAATTCGTAAGGGGAAACTACAAACAATTAGCCAGAACAG TGTGTGGCCGAGATGAGGAGACGCTAATTTTAAGGCTAAACAAGCAAATTTCATGAACTTAAGT AATCAAATACGAAGGCACTGTCCAGTAAAAGCTGGCCACATTCATCCCCAATTATGATCACATG ACAAAGTAAACGAAAACTAAAAGAGGAGAACACTTAGAAAAACACAATCATCAAAAAATTTAAT TAAAGCAAGCTCATATTCAATATAAAATGATACATACCATCTAGAGCTCTCGTCAATTGATCCT ACAACAGAAGCAGGTATTCGTCGCCATTTAAAGCAATCATCACATCGAACCCAGGCACTCTCTG TGGAATAGCTATCTTCAATAGTAACATCCACAACCATTTCCCCATGGGTCACATCTGATGATAT GGTACCATAAGTGGCACTGGTTTTCCCAATATCAGCATCTAGAAGGGCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.118350285

Conservation Information
Conserved circRNAs	NA
PMCS	0.118350285

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chen et al., 2017a

circRNA

Detail information of AT1G77300_circ_g.6

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