Detail information of Os04g0398800_circ_g.6


General Information
CircRNA Name Os04g0398800_circ_g.6
ID in PlantcircBase osa_circ_023682
Alias NA
Organism Oryza sativa
Position chr4: 19700706-19705339  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0398800
Parent gene annotation Similar to H0209H04.5 protein. (Os04t0398800-01)
Parent gene strand -
Alternative splicing Os04g0398800_circ_g.7 Os04g0398800_circ_g.8 Os04g0398800_circ_g.9 Os04g0398800_circ_g.10
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0398800-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACCTTAATCCAGAAACTCACCGGGATAATATCTAGAACTGCAAATATTTTAGCTGCATACTTT
GAAGCATAGTAGGTTGAGACATACTGAAGATCTGGAcaacccatcatagcctctataaacatgg
agcgcgatggatccgttaaatgaactatatattgcagcaggtgacctgtgatatgacagaaaaa
atgaattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAACCCATCATAGCCTCTATAAACATGGAGCGCGATGGATCCGTTAAATGAACTATATATTGCA
GCAGGTGACCTGTGATATGACAGAAAAAATGAATTCTGAAAGATTTGTTGTGCTTTGTTAAAAC
CAGTGGTTCGTTTTTAGCTGATTAAATTTTGGACTGAGTCCAGCCAGAAATTTGTATGCATTGC
AGACATTTGGCTAAGTGGCTAGGCATTTGACAAAGAATAGGCCAGAAAATCAAAAGTTTACCCT
AAAACATAAGACTATTGATTACTGACAGTCCAATACATTTATGACAAATGACAAATCTATGTTG
TTCAGTGAAACCTGAATATCCTTGCGCAAATGTTGAGCCATGAAGAGATTTCTTTGCTTGAGCA
ATTATTTTATTTTATTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA
TTATTATTATTATTATTATTATTTTGGTGGGGGGGGGGTAGATTCCCTGGGTCCAAAAAATAGT
CATAAGTTAATCAAAGAGCTAGTCCGTAACCACTTTCCAGATCCATGGGTGGACAATTCAAGTC
TAAGGGTATTTCTATTATTTCCCTCTGCTGAATACACCTTGGAGATACCAGAGTGATATGTTGT
TAAGCTGCTTATCAATGCAGGGGAGATATGTGAAAACGAAGGGAATAGAGGATAAATCAGTAAA
TTGACATGCACAACTTATTTTGCACGCTGCAATTACTAGGAGCTCGCTGCTCTAAGGTGTATTA
ATCTAAAATATTACCAAAAAAAGTGCCCGGATTGGACATATGATTCGATGGTTTCACCATATTA
GTGGATGGTTGCATGCATCCCATAAACTCTAAGACCTCCTGTTGTAGACAGAAAAGGTAAAGAA
GTATGACTAATCTGAATGGTAACGGAAATAGTAAGGGTAATCGGGGAGATACTCGCATACCCTT
TTAGCACATTCTTCTAGCACAGCAGTCAATGTTTCTTCCCAGATTGAACACCCGTCAATGTGCA
GTATGTGCTACAATGATGCATGAAACAAAAATAAAGATCAGTTTCAGTAGCTCATGAACTATTA
AGGACAAAATGCATGAAACTATATGAATGCACACTAAAGATTCCCGACACTAATTAGCTCTCAG
CTCAATAAGAACCTCATAACTTACTAAACAACCACATATCGAATATGGATTGTGAGTCTTTCTT
AGTCAAACTAAGCTGTGTTCTATGGCCAACTTTGTGCTGATAAAGGCAAATATGCATCAATATC
TTAACATACTAGAAGAAACCATTAGATATGTGTTATTTTCAAGGGAACATGTGTTTTTTAAGCA
CAAATACTGGTGGAAATGCCCATATTCATTGTCAACTAAAAGGAATGGGATACTTGGCAAGGCC
CTCTTTATAACAATGTATGTAAAGTTGACCATGCCTGGTAACTCTTTAGTTACTTGGGTCCTGG
CCATAGCCAAACCAAAAACACACCAACTTGTGCAGCTAGATTCCAAAAAGAATGAACACATATT
GATTTCAAAAATCAGCAAATATTGTTACTGACCCAATCTATGGCTAACCAGGAGAACATATATC
ATATTCATATGCACACAAGTTCTCACGTGTACACACCGTGCACACCAATTAACAAATGTCACCG
TAAAATCTAGAAAAAATAGTACATGTACATTCATTAGTATTACATCTACGTGTAAAGTCCCACC
TTCAAATTCATCCTACATAGAGAGTAACATAAAACACAAAATTCTATGGATTTATAGCCTTAAG
ACTGCCAGTTTTTTTTTCGTTACAGCTAAAATATAATGAATTTGAGGTTAAGATTTTACATGTA
GGTGTAATACTATTGAAAGTATATGCACAATATTTTCTAGATTTTTCAGTGACATTTGTTAGTT
GGTATGCACAGAGTGTGCACGCGAAACTTGTGTGCACAAGATATGTTCCCGCTAACCATGAGCA
CTGAAAGCCTAAGTCATTGATCACCCTACTTTCATCAGGAGGCAAATCATTAGGCTGGTACATA
CAAAATAAATTCTCACTTATGGGTGTTCATCTGACTATTCGGTACATCAGCTCCATTCATAGAA
ACTTCAAACACGTTCTTTTACACCTTAAATAAGAAAACTAATGCCGAGTCACCTCTTCTAATTA
ATTGACTTACATGGTTGTATTAACTGAAGACTGGTGTATACTAATGGATATTTCTAAAAGCAAA
GAAAGAAAAATGTAAGATTCACTAAAAATACCTGTAGGAATTCCATTCTCTGCATCTGTGAAAG
CATATAATTTGACAATGACATGAGATTGCCTTCTATATCACCTGCTCAGAAGTGTAAAACACAC
AGAATCACATATTAATCCAGTTACTCCATTGATTTTTTTTTTTGAAAAGAAAAACAGCTCCAAA
TACAAATAGTTCTGAATGTAGTTCTTAAAGGATGGCATATATAATCATCGTCAGCATAGTTGTT
GAGAAAATGTACAGAATCAACAGTTTCTTCTACAATTATACCACATCTTTTTTGCAATGAAGTA
TAAGATTACAAAGTTGTATTTATGATTAACGTAAAGTTGAATATTTTTTTCACTACAACTCTAG
AAGTGTGTGCACCAATGCTAACAACAATACTTAAACAAAAAATATAATCACATAGGCCCAGAGA
GTAAAATGTTAGTTCAGTGTATTTTGATTCCATACCATAAATGAGCAATGATAAGGCTTTCAGC
TTGCCTTGTAGTTGGCTTACTAACTCCTTTTTTATCATTTGCTTAAGCCATCCACCTAAATTCT
TCATACAAAATAGGATGTAAAAAAGCATGATTGAAAGGGAAGAACTATGTCAGAGAGTTGAACC
AAATCTACGAGCAAAGATAAGCACACACCAGATCTATAAGGCCATCAAAGTTCTTTGACATGTT
CAAAAGGCCCTGCATTATCATAAGATATCACAATATTTACATGTTACTGAACCAAGCAATTACA
GAATATATCATTATCGAGTTATATCCCAATTCCCAAGTTTGATACCTCCAAGCCAATCAAAAAG
AAATTCAACCAGATTTGCTTAGATAAAAAAATGTCTACTGAATACAAAGAGCTATAGCCTTATA
GGTAGTCTCTTTACTTAAATTATCCAGCTTCTTAGATTGTTCTTCTTTGGTTAGGCTAGTAAAA
GATTATATGGTGGCAAATAATGCACATATTAATAAGTTCCGACGAATCCTTGGAAAAGAAACAA
TAGGTACCTCTGAAACAATGCATAGTTTGGCAGCCTGCTGTGCTTGGCATAGTTGTTGATCCAA
CTGTGAAAAGTAGAGAACATAAGAAACAAAATAACAACGAAGTAAAGAACCTTACTCTATCTTT
GAATAGGGGCGACATATGTCAAGAAAAACATATTTCATATTTTCTTACTTCTTAGGTCTGTATG
CGTGGAGCTAAAATGACATCTCAGTAAGACAACAGGTAACGTCATGAAATTTCAGCAACTATCC
CTAATGTTTCATCTGAGCCCAGAGATCTAATATTTTTAATAACCAATGTCATTTCCAAAAATAA
AAGTCACCCAGTATTGGATCCAGGGGATATTTAGATGCTGAATTTTGCAGTGGCTCATGTTTCA
TGAGAAAAATGAGACCAGTTCCCACCACCTTGGCACAGTTTCCTTTTTCTTTTTTTTTTCTATA
AAACCCAGCCAACCAGCCAAAACAAGTGTGTCTATCTTCCATTTCTAATAGTATGTTGAAAAGT
TATCTTTTTATCCGTGATATGAAGAAACTTTTTTTTTTACAAAAAAGGGGGTTTATCCATGATA
TAAAGTAAATCAAAACATAAGTAATATATTGCACAGAGCACTTACTTAGGATATGCAGGAAACA
ATAATGATCCTATCAAGCATGTACCAAGTATTCAAATATCTAAACACAAGCAAAATTGGTGTTT
ATGTTTCTCAATCAACCACAAGTTTCTTAGCAAAGGTAAATGAATAGATATATTTAGGGGGAAT
AAAGGGCAGCACTTGATCACACGGTGTTCAATGAAAATAATATTTGAAATCATAATAGTGCATC
CATTTTCTCATGTGCAATAGCTTTGAACCTTTAAAATACCAAAAGAAATTGATAGAATAAGGTA
AAATTATAATGCAAACACCTGCATGAGATCTTCCAATGTTTCCTTGTTGATGCGATTTATTAGA
TGAGTGGACTGTTCAGCATTGATGTAATCCACATCAATAGAAATTTTAAGCAATATAGCCTGCG
CATTTTGAAAGAAAATGAATGTACATGAGACCACCAAACGATTCTTATTGAGGCAATTCTGTAG
ACTAATGGAGCATAAACTGCTAAGAAAGATATAAAGTAAAGGATAATAAGAGCATCATTGTCTA
CCAAAATCAATATATTCCCAAATAAAACCCTAGCATGTATTACACGTTACCAAGTGAGCACCTT
ACTATGATAGCACTATCATAATATCATGTTTGGCTAGAAATAAACAGACGGAAGCACCTTAATC
CAGAAACTCACCGGGATAATATCTAGAACTGCAAATATTTTAGCTGCATACTTTGAAGCATAGT
AGGTTGAGACATACTGAAGATCTGGA
Conservation Information
Conserved circRNAs osi_circ_014316
PMCS 0.099506256
Functional Information
Coding potential Y
Potential coding position 19700733-19701473(-)
Potential amino acid sequence MFIEAMMGCPDLQYVSTYYASKYAAKIFAVLDIIPAILLKISIDVDYINAEQSTHLINRINKET
LEDLMQLDQQLCQAQQAAKLCIVSEGLLNMSKNFDGLIDLNLGGWLKQMIKKELVSQLQGKLKA
LSLLIYGDIEGNLMSLSNYMLSQMQRMEFLQHILHIDGCSIWEETLTAVLEECAKREVLEFMGC
MQPSTNMVKPSNHMSNPGTFFGNILD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017