Plant Circular RNA Database

Detail information of Os04g0398800_circ_g.9

			
						 General Information
					
						CircRNA Name
						Os04g0398800_circ_g.9
					
						ID in PlantcircBase
						osa_circ_023685
					
						Alias
						Os_ciR4212
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr4: 19705261-19708393  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os04g0398800						
					
						Parent gene annotation
						
							Similar to H0209H04.5 protein. (Os04t0398800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os04g0398800_circ_g.6 Os04g0398800_circ_g.7 Os04g0398800_circ_g.8 Os04g0398800_circ_g.10 						
					
						Support reads
						8
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os04t0398800-01:8

General Information
CircRNA Name	Os04g0398800_circ_g.9
ID in PlantcircBase	osa_circ_023685
Alias	Os_ciR4212
Organism	Oryza sativa
Position	chr4: 19705261-19708393 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os04g0398800
Parent gene annotation	Similar to H0209H04.5 protein. (Os04t0398800-01)
Parent gene strand	-
Alternative splicing	Os04g0398800_circ_g.6 Os04g0398800_circ_g.7 Os04g0398800_circ_g.8 Os04g0398800_circ_g.10
Support reads	8
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os04t0398800-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACTCTCTGATGATAGAAAGAAGATTCAGAGAATTATCCAGAACATATTCCTTGTTTACCGCATG
CATATGACTATCCAGGTCAGCTAGAAGAGAAGATACcgggataatatctagaactgcaaatatt
ttagctgcatactttgaagcatagtaggttgagacatactgaagatctggactgtcaagttttg
acaattga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 144
Transcript exons: 19705261-19705338,19708328-19708393
CGGGATAATATCTAGAACTGCAAATATTTTAGCTGCATACTTTGAAGCATAGTAGGTTGAGACA
TACTGAAGATCTGGATCCAGAACATATTCCTTGTTTACCGCATGCATATGACTATCCAGGTCAG
CTAGAAGAGAAGATAC
Transcript length: 873
Transcript exons: 19705261-19705339,19705915-19706078,19706254-19706364,19
706946-19707038,19707180-19707242,19707770-19707895,1970
8020-19708118,19708256-19708393
CGGGATAATATCTAGAACTGCAAATATTTTAGCTGCATACTTTGAAGCATAGTAGGTTGAGACA
TACTGAAGATCTGGACTTTCATACTGCTTGATCCTCTGCAGCGGTGCATCCAACCATGATTGAA
ATTTAAGAAACATCGTATGCAAAAATAAAGACTCTGATGGATCTTGACTGATCTTCTTCTTAAG
AAGTTCCTCAAAATAAGTAAGATAACCCCATGCATACTTACCATCAGTAATCACTGAGAAAACA
CTTATGGACTCTTGGTTTAGGTTTAGAACTTTTATCATATCATGAAGATTCTTCTGTATTTTGG
AGAAGCCATGCTTTATCTGTATATTCTCTTTGATTTGGTGAAGTAGCTCAATATCTTTTAGCGT
AGATAGCACACGATGAATTATCCTGCCGGAGTTTCCAATTGTGGCATAATCCAGGGAGCTAACC
TCTGATGACAGGTGCTCCAACCAGTCTTTGATGCTCTTGTTTTTTAATTTGCATGACGCAGCCC
AAGTCCCAAGATAGTTCTGAGACAGGTCCTTCATACATTCCAAAGCATCATGCCTCTTCTCATA
CCACATACTTTTTCTGGTTTTCAATAGTTCAGCATGCAGTTCCTTCACCTCAAACTCAAGTTTA
GCAGTCTTCATCAGGAGCTGTAACAGCTTCCCTTCGTCAGCATGTTGTGATGACCCTAAACAGA
TCACTAGGTCCCTTGCCTTCTTATCATTTGTCATGCGGTGAAGCAAAAGCCAACGCAGTGTGCA
ATTGCACTCTCTGATGATAGAAAGAAGATTCAGAGAATTATCCAGAACATATTCCTTGTTTACC
GCATGCATATGACTATCCAGGTCAGCTAGAAGAGAAGATAC
						
					

						Genomic sequence
						
							CGGGATAATATCTAGAACTGCAAATATTTTAGCTGCATACTTTGAAGCATAGTAGGTTGAGACA
TACTGAAGATCTGGACTGTCAAGTTTTGACAATTGAAATTCAGAAGTAAGATCTACATATTCCA
TAAGTATGAGTTCAACACATCAACATATATGATAAATTGATACGGAGAGTATTTATACAACGAA
GGAAAAGGAATTTCTCTAATTATAGCAACTCGTGCCGAAACAAACTCACCAAAAAAGGGGGTTA
TCAATTCATGTAACTCACAAGTCACAACTTTGTTACTAAATAATAATGTAGTGAAATATCTAAA
CCATGCAATAAACTCATGCAACAATTGAAATGAGGATACTTTAATACATCCAGAACACTATCTT
TCCCTTAAATGGAACAACAAAGAAATGACTTCCAGTATGTTTACTGAATGCATTCAACATGGCA
CAATATACAACAATATGTCATACATTGTGATCTTAGAAGCAATAGTTTGTTTACCAATTCTTTC
AAAACATAGTTTGTTTACCAAAGTTGAGAGCTTGTTATTACCAGTCATAAAAACATAACTAATA
ATAACATAGAGAAGAATCTGGAACACCATGCTAGCATTAACAGCACTTCCTATTAAATGACTAG
ATCAGGAGAGAAACCTTTCATACTGCTTGATCCTCTGCAGCGGTGCATCCAACCATGATTGAAA
TTTAAGAAACATCGTATGCAAAAATAAAGACTCTGATGGATCTTGACTGATCTTCTTCTTAAGA
AGTTCCTCAAAATAAGTAAGATAACCCCATGCATACTTACCATCAGTAATCTGAGAGAGAGAAG
CATATGGTTATTGTTGACGGCTAAGCTTAAAAGGACAGCAATTTTGTAATATCCCAACATTCCA
ATTTTGGAGAAGTAACTCACCAATGCTGAGCATATTAGCAACATGATAAATACAATTGTTTCAT
AGAATGGACACAGATCTCAGATACAACTCTTACCACTGAGAAAACACTTATGGACTCTTGGTTT
AGGTTTAGAACTTTTATCATATCATGAAGATTCTTCTGTATTTTGGAGAAGCCATGCTTTATCT
GTATATTCTCTTTGATCTGCATTATTTAGTCAGAAAAAACTAATAAATATGGATATCTGAAAAG
CATATTCAAAAGAAAAAATATTAGTGGGCATGCCAAGTCTCCCATTGCATGCACAGTTCTATCA
CTACTCAAAAGCCAAGATGTATTACTATTAGCTCCCAAAGTGCCATCCCATAAGTTTCAACAAT
TCAGGGCAGTATCCTCATTTTCTGCATTAACTTTTTTCCCAGAATCTAAACAATATTTTGGTCA
ACACAAAATCAAGGAACGGCCAATTCTAGTTAAAATAAGAAGCAAGTCCAGGTCACACATGGAA
TTGCCCTTTTTGTTGTCTTGTGAACTTAGCAACCATGGTGGACTGGTGGTATGCCATCATTTAC
AGAACCCCATTTCTTGCTGCCTAGGTCCTAACACCTATGCACCATCTCCATCTACAGCACGACT
CTTCCTAGTCACCACAAACCGCAACTCCACATCCACCCACACACCACAATTAATCATCGTGTTA
TCTAGTTCGAAGACATGACAATGGTATGGGTCAGTTCTATCAAAATTGTGCTCATTAATGTTAA
AGAGGATGAGAAGCTTCTTACTTGGTGAAGTAGCTCAATATCTTTTAGCGTAGATAGCACACGA
TGAATTATCCTGCCGGAGTTTCCAATTGTGGCATAATCCAGGGAGCTAACCTGTTAGTCGCAAA
TATAGATATATCTACAGGATTAAAAAACTCCAGTATAGAAACCACTAGTACTCACATACAAAAT
TGTCAGAAGCTTCCATGACTACAAATAAAAGAGAGAAATATGAAAATTTGAACAGCAATTGACC
TCTGATGACAGGTGCTCCAACCAGTCTTTGATGCTCTTGTTTTTTAATTTGCATGACGCAGCCT
ATAGTCAAAAGAATAAGAAGAAGAAAACACCTAAGGCAGGCATTCACATTTTAGGATAAGCCTC
ATAGAATGATATCCATGAATAGTTGCAAGAGTTAACTTTCAAGAACTAAGAGTAAAATATGCAG
TAGAAAACTATCAAACTGCAAAAAGTGCACGAGTGTTATTTTTATACCCATCGAAGCAATTCGG
CAGTGCTAGCTGCATGTTAAATGTCTGGCAACATGAACCAGAGCATTATAGATTGTTACAGCCA
GATTATAGAAGGTAAATGACTAAATGGAACTCTTTTTGTGGGGGCTTTAGAGTGGATGAAATAT
ATTTTGGCCAACGTATTTTCAACCAATGTGGAAATTAAGCAGGTGCAAATGAAGAGAATATTGT
GTAGATGAAAACATATGAACAAGTCTCAACAGGAAATTATCAACTGGATAAAACATTGGAATTT
TCCAAGACAAAAAGTGAAAGGTGGCACTCTTCTTTTTAATGTCTCTAGCAAGACTATGTTGGAA
GTTCAGAACGTACCCAAGTCCCAAGATAGTTCTGAGACAGGTCCTTCATACATTCCAAAGCATC
ATGCCTCTTCTCATACCACATACTTTTTCTGGTTTTCAATAGTTCAGCATGCAGTTCCTTCACC
TCAAACTCAAGCTGTATATACAGAAGAAAACAAATAAGGCAACAAATACTGGACTACGACTAAG
ATAATACAGAACACTTCTTCCAAAAAAAAAGATAATACACACATTTCAAGTATTCAGATAGGAA
ACTTTACTTTAGCAGTCTTCATCAGGAGCTGTAACAGCTTCCCTTCGTCAGCATGTTGTGATGA
CCCTAAACAGATCACTAGGTCCCTTGCCTTCTTATCATTTGTCTAGGAAGTTATATGTTACAAA
TGTGAGACGGCAGAAACACAGGCCTAATTCTGATCCAGTATCTTATGGAAGTAATGCTTAATGA
TTATCTAATAGGAAATGGTTGTCTACTCCGAGGACCTACATAGGGGATTACCATGCGGTGAAGC
AAAAGCCAACGCAGTGTGCAATTGCACTCTCTGATGATAGAAAGAAGATTCAGAGAATTATCCA
GAACATATTCCTTGTTTACCGCATGCATATGACTATCCAGGTCAGCTAGAAGAGAAGATAC
						
					

			
		

Sequences
Splice junction sequence	ACTCTCTGATGATAGAAAGAAGATTCAGAGAATTATCCAGAACATATTCCTTGTTTACCGCATG CATATGACTATCCAGGTCAGCTAGAAGAGAAGATACcgggataatatctagaactgcaaatatt ttagctgcatactttgaagcatagtaggttgagacatactgaagatctggactgtcaagttttg acaattga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 144 Transcript exons: 19705261-19705338,19708328-19708393 CGGGATAATATCTAGAACTGCAAATATTTTAGCTGCATACTTTGAAGCATAGTAGGTTGAGACA TACTGAAGATCTGGATCCAGAACATATTCCTTGTTTACCGCATGCATATGACTATCCAGGTCAG CTAGAAGAGAAGATAC Transcript length: 873 Transcript exons: 19705261-19705339,19705915-19706078,19706254-19706364,19 706946-19707038,19707180-19707242,19707770-19707895,1970 8020-19708118,19708256-19708393 CGGGATAATATCTAGAACTGCAAATATTTTAGCTGCATACTTTGAAGCATAGTAGGTTGAGACA TACTGAAGATCTGGACTTTCATACTGCTTGATCCTCTGCAGCGGTGCATCCAACCATGATTGAA ATTTAAGAAACATCGTATGCAAAAATAAAGACTCTGATGGATCTTGACTGATCTTCTTCTTAAG AAGTTCCTCAAAATAAGTAAGATAACCCCATGCATACTTACCATCAGTAATCACTGAGAAAACA CTTATGGACTCTTGGTTTAGGTTTAGAACTTTTATCATATCATGAAGATTCTTCTGTATTTTGG AGAAGCCATGCTTTATCTGTATATTCTCTTTGATTTGGTGAAGTAGCTCAATATCTTTTAGCGT AGATAGCACACGATGAATTATCCTGCCGGAGTTTCCAATTGTGGCATAATCCAGGGAGCTAACC TCTGATGACAGGTGCTCCAACCAGTCTTTGATGCTCTTGTTTTTTAATTTGCATGACGCAGCCC AAGTCCCAAGATAGTTCTGAGACAGGTCCTTCATACATTCCAAAGCATCATGCCTCTTCTCATA CCACATACTTTTTCTGGTTTTCAATAGTTCAGCATGCAGTTCCTTCACCTCAAACTCAAGTTTA GCAGTCTTCATCAGGAGCTGTAACAGCTTCCCTTCGTCAGCATGTTGTGATGACCCTAAACAGA TCACTAGGTCCCTTGCCTTCTTATCATTTGTCATGCGGTGAAGCAAAAGCCAACGCAGTGTGCA ATTGCACTCTCTGATGATAGAAAGAAGATTCAGAGAATTATCCAGAACATATTCCTTGTTTACC GCATGCATATGACTATCCAGGTCAGCTAGAAGAGAAGATAC
Genomic sequence	CGGGATAATATCTAGAACTGCAAATATTTTAGCTGCATACTTTGAAGCATAGTAGGTTGAGACA TACTGAAGATCTGGACTGTCAAGTTTTGACAATTGAAATTCAGAAGTAAGATCTACATATTCCA TAAGTATGAGTTCAACACATCAACATATATGATAAATTGATACGGAGAGTATTTATACAACGAA GGAAAAGGAATTTCTCTAATTATAGCAACTCGTGCCGAAACAAACTCACCAAAAAAGGGGGTTA TCAATTCATGTAACTCACAAGTCACAACTTTGTTACTAAATAATAATGTAGTGAAATATCTAAA CCATGCAATAAACTCATGCAACAATTGAAATGAGGATACTTTAATACATCCAGAACACTATCTT TCCCTTAAATGGAACAACAAAGAAATGACTTCCAGTATGTTTACTGAATGCATTCAACATGGCA CAATATACAACAATATGTCATACATTGTGATCTTAGAAGCAATAGTTTGTTTACCAATTCTTTC AAAACATAGTTTGTTTACCAAAGTTGAGAGCTTGTTATTACCAGTCATAAAAACATAACTAATA ATAACATAGAGAAGAATCTGGAACACCATGCTAGCATTAACAGCACTTCCTATTAAATGACTAG ATCAGGAGAGAAACCTTTCATACTGCTTGATCCTCTGCAGCGGTGCATCCAACCATGATTGAAA TTTAAGAAACATCGTATGCAAAAATAAAGACTCTGATGGATCTTGACTGATCTTCTTCTTAAGA AGTTCCTCAAAATAAGTAAGATAACCCCATGCATACTTACCATCAGTAATCTGAGAGAGAGAAG CATATGGTTATTGTTGACGGCTAAGCTTAAAAGGACAGCAATTTTGTAATATCCCAACATTCCA ATTTTGGAGAAGTAACTCACCAATGCTGAGCATATTAGCAACATGATAAATACAATTGTTTCAT AGAATGGACACAGATCTCAGATACAACTCTTACCACTGAGAAAACACTTATGGACTCTTGGTTT AGGTTTAGAACTTTTATCATATCATGAAGATTCTTCTGTATTTTGGAGAAGCCATGCTTTATCT GTATATTCTCTTTGATCTGCATTATTTAGTCAGAAAAAACTAATAAATATGGATATCTGAAAAG CATATTCAAAAGAAAAAATATTAGTGGGCATGCCAAGTCTCCCATTGCATGCACAGTTCTATCA CTACTCAAAAGCCAAGATGTATTACTATTAGCTCCCAAAGTGCCATCCCATAAGTTTCAACAAT TCAGGGCAGTATCCTCATTTTCTGCATTAACTTTTTTCCCAGAATCTAAACAATATTTTGGTCA ACACAAAATCAAGGAACGGCCAATTCTAGTTAAAATAAGAAGCAAGTCCAGGTCACACATGGAA TTGCCCTTTTTGTTGTCTTGTGAACTTAGCAACCATGGTGGACTGGTGGTATGCCATCATTTAC AGAACCCCATTTCTTGCTGCCTAGGTCCTAACACCTATGCACCATCTCCATCTACAGCACGACT CTTCCTAGTCACCACAAACCGCAACTCCACATCCACCCACACACCACAATTAATCATCGTGTTA TCTAGTTCGAAGACATGACAATGGTATGGGTCAGTTCTATCAAAATTGTGCTCATTAATGTTAA AGAGGATGAGAAGCTTCTTACTTGGTGAAGTAGCTCAATATCTTTTAGCGTAGATAGCACACGA TGAATTATCCTGCCGGAGTTTCCAATTGTGGCATAATCCAGGGAGCTAACCTGTTAGTCGCAAA TATAGATATATCTACAGGATTAAAAAACTCCAGTATAGAAACCACTAGTACTCACATACAAAAT TGTCAGAAGCTTCCATGACTACAAATAAAAGAGAGAAATATGAAAATTTGAACAGCAATTGACC TCTGATGACAGGTGCTCCAACCAGTCTTTGATGCTCTTGTTTTTTAATTTGCATGACGCAGCCT ATAGTCAAAAGAATAAGAAGAAGAAAACACCTAAGGCAGGCATTCACATTTTAGGATAAGCCTC ATAGAATGATATCCATGAATAGTTGCAAGAGTTAACTTTCAAGAACTAAGAGTAAAATATGCAG TAGAAAACTATCAAACTGCAAAAAGTGCACGAGTGTTATTTTTATACCCATCGAAGCAATTCGG CAGTGCTAGCTGCATGTTAAATGTCTGGCAACATGAACCAGAGCATTATAGATTGTTACAGCCA GATTATAGAAGGTAAATGACTAAATGGAACTCTTTTTGTGGGGGCTTTAGAGTGGATGAAATAT ATTTTGGCCAACGTATTTTCAACCAATGTGGAAATTAAGCAGGTGCAAATGAAGAGAATATTGT GTAGATGAAAACATATGAACAAGTCTCAACAGGAAATTATCAACTGGATAAAACATTGGAATTT TCCAAGACAAAAAGTGAAAGGTGGCACTCTTCTTTTTAATGTCTCTAGCAAGACTATGTTGGAA GTTCAGAACGTACCCAAGTCCCAAGATAGTTCTGAGACAGGTCCTTCATACATTCCAAAGCATC ATGCCTCTTCTCATACCACATACTTTTTCTGGTTTTCAATAGTTCAGCATGCAGTTCCTTCACC TCAAACTCAAGCTGTATATACAGAAGAAAACAAATAAGGCAACAAATACTGGACTACGACTAAG ATAATACAGAACACTTCTTCCAAAAAAAAAGATAATACACACATTTCAAGTATTCAGATAGGAA ACTTTACTTTAGCAGTCTTCATCAGGAGCTGTAACAGCTTCCCTTCGTCAGCATGTTGTGATGA CCCTAAACAGATCACTAGGTCCCTTGCCTTCTTATCATTTGTCTAGGAAGTTATATGTTACAAA TGTGAGACGGCAGAAACACAGGCCTAATTCTGATCCAGTATCTTATGGAAGTAATGCTTAATGA TTATCTAATAGGAAATGGTTGTCTACTCCGAGGACCTACATAGGGGATTACCATGCGGTGAAGC AAAAGCCAACGCAGTGTGCAATTGCACTCTCTGATGATAGAAAGAAGATTCAGAGAATTATCCA GAACATATTCCTTGTTTACCGCATGCATATGACTATCCAGGTCAGCTAGAAGAGAAGATAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.194035453

Conservation Information
Conserved circRNAs	NA
PMCS	0.194035453

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							19708362-19705263(-)
						
						Potential amino acid sequence
						
							MHAVNKEYVLDNSLNLLSIIRECNCTLRWLLLHRMTNDKKARDLVICLGSSQHADEGKLLQLLM
KTAKLEFEVKELHAELLKTRKSMWYEKRHDALECMKDLSQNYLGTWAASCKLKNKSIKDWLEHL
SSEVSSLDYATIGNSGRIIHRVLSTLKDIELLHQIKENIQIKHGFSKIQKNLHDMIKVLNLNQE
SISVFSVITDGKYAWGYLTYFEELLKKKISQDPSESLFLHTMFLKFQSWLDAPLQRIKQYESPD
LQYVSTYYASKYAAKIFAVLDIIPVSSLLADLDSHMHAVNKEYVLDNSLNLLSIIRECNCTLRW
LLLHRMTNDKKARDLVICLGSSQHADEGKLLQLLMKTAKLEFEVKELHAELLKTRKSMWYEKRH
DALECMKDLSQNYLGTWAASCKLKNKSIKDWLEHLSSEVSSLDYATIGNSGRIIHRVLSTLKDI
ELLHQIKENIQIKHGFSKIQKNLHDMIKVLNLNQESISVFSVITDGKYAWGYLTYFEELLKKKI
SQDPSESLFLHTMFLKFQSWLDAPLQRIKQYESPDLQYVSTYYASKYAAKIFAVLDIIPVSSLL
ADLDSHMHAVNKEYVLDNSLNLLSIIRECNCTLRWLLLHRMTNDKKARDLVICLGSSQHADEGK
LLQLLMKTAKLEFEVKELHAELLKTRKSMWYEKRHDALECMKDLSQNYLGTWAASCKLKNKSIK
DWLEHLSSEVSSLDYATIGNSGRIIHRVLSTLKDIELLHQIKENIQIKHGFSKIQKNLHDMIKV
LNLNQESISVFSVITDGKYAWGYLTYFEELLKKKISQDPSESLFLHTMFLKFQSWLDAPLQRIK
QYESPDLQYVSTYYASKYAAKIFAVLDIIPVSSLLADLDSHMHAVNKEYVLDNSLNLLSIIREC
NCTLRWLLLHRMTNDKKARDLVICLGSSQHADEGKLLQLLMKTAKLEFEVKELHAELLKTRKSM
WYEKRHDALECMKDLSQNYLGTWAASCKLKNKSIKDWLEHLSSEVSSLDYATIGNSGRIIHRVL
STLKDIELLHQIKENIQIKHGFSKIQKNLHDMIKVLNLNQESISVFSVITDGKYAWGYLTYFEE
LLKKKISQDPSESLFLHTMFLKFQSWLDAPLQRIKQYESPDLQYVSTYYASKYAAKIFAVLDII
P(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	19708362-19705263(-)
Potential amino acid sequence	MHAVNKEYVLDNSLNLLSIIRECNCTLRWLLLHRMTNDKKARDLVICLGSSQHADEGKLLQLLM KTAKLEFEVKELHAELLKTRKSMWYEKRHDALECMKDLSQNYLGTWAASCKLKNKSIKDWLEHL SSEVSSLDYATIGNSGRIIHRVLSTLKDIELLHQIKENIQIKHGFSKIQKNLHDMIKVLNLNQE SISVFSVITDGKYAWGYLTYFEELLKKKISQDPSESLFLHTMFLKFQSWLDAPLQRIKQYESPD LQYVSTYYASKYAAKIFAVLDIIPVSSLLADLDSHMHAVNKEYVLDNSLNLLSIIRECNCTLRW LLLHRMTNDKKARDLVICLGSSQHADEGKLLQLLMKTAKLEFEVKELHAELLKTRKSMWYEKRH DALECMKDLSQNYLGTWAASCKLKNKSIKDWLEHLSSEVSSLDYATIGNSGRIIHRVLSTLKDI ELLHQIKENIQIKHGFSKIQKNLHDMIKVLNLNQESISVFSVITDGKYAWGYLTYFEELLKKKI SQDPSESLFLHTMFLKFQSWLDAPLQRIKQYESPDLQYVSTYYASKYAAKIFAVLDIIPVSSLL ADLDSHMHAVNKEYVLDNSLNLLSIIRECNCTLRWLLLHRMTNDKKARDLVICLGSSQHADEGK LLQLLMKTAKLEFEVKELHAELLKTRKSMWYEKRHDALECMKDLSQNYLGTWAASCKLKNKSIK DWLEHLSSEVSSLDYATIGNSGRIIHRVLSTLKDIELLHQIKENIQIKHGFSKIQKNLHDMIKV LNLNQESISVFSVITDGKYAWGYLTYFEELLKKKISQDPSESLFLHTMFLKFQSWLDAPLQRIK QYESPDLQYVSTYYASKYAAKIFAVLDIIPVSSLLADLDSHMHAVNKEYVLDNSLNLLSIIREC NCTLRWLLLHRMTNDKKARDLVICLGSSQHADEGKLLQLLMKTAKLEFEVKELHAELLKTRKSM WYEKRHDALECMKDLSQNYLGTWAASCKLKNKSIKDWLEHLSSEVSSLDYATIGNSGRIIHRVL STLKDIELLHQIKENIQIKHGFSKIQKNLHDMIKVLNLNQESISVFSVITDGKYAWGYLTYFEE LLKKKISQDPSESLFLHTMFLKFQSWLDAPLQRIKQYESPDLQYVSTYYASKYAAKIFAVLDII P(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os04g0398800_circ_g.9

Address

Any questions?

Supported by