Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os08g0328300_circ_g.1 |
ID in PlantcircBase | osa_circ_036749 |
Alias | NA |
Organism | Oryza sativa |
Position | chr8: 14477246-14478472 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os08g0328300 |
Parent gene annotation |
ENT domain containing protein. (Os08t0328300-01);ENT domain cont aining protein. (Os08t0328300-02) |
Parent gene strand | + |
Alternative splicing | Os08g0328300_circ_g.2 Os08g0328300_circ_g.3 Os08g0328300_circ_g.4 |
Support reads | 2 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os08t0328300-01:5 Os08t0328300-02:5 |
Conservation Information | |
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Conserved circRNAs |
osi_circ_007674* osi_circ_017796 zma_circ_008041* zma_circ_001688 |
PMCS | 0.259755712 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
14477372-14477287(+) 14477390-14478423(-) 14477274-14478248(-) |
Potential amino acid sequence |
METQIHQLEQDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDDIIQR IREWRETKGGLQADMVNNAQRSHDRVPSPTTSARKRQKTSQSIPSASVPVPSPAVHSQTLTAPM QPLSSATKKVAPPGTKGKKTKPGQKIPGGSAIKTMSSAGPSGRGPIMNKNLSGGLPTEPISVNP LIGRKVMTRWPDDNSFYEAVITDYDPQLDRYALVYDINTADETWEWVDFKEELMMIFHRHIRTE V*(+) MNLCFHICLWLSSIIWNSANNISPITTNTSTASYTSVLICRWKIIISSSLKSTHSQVSSAVFMS *(-) MSVEDHHQFLFKVNPLPGFICCIYVINQCITIQLWIIVSYNSLIKAIIIRPPSHDLPSD*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |