Detail information of AT2G03220_circ_g.1


General Information
CircRNA Name AT2G03220_circ_g.1
ID in PlantcircBase ath_circ_012660
Alias NA
Organism Arabidpsis thaliana
Position chr2: 971821-972076  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT2G03220
Parent gene annotation Glycosyltransferase (Fragment)
Parent gene strand -
Alternative splicing AT2G03220_circ_g.2
Support reads 2
Tissues seedlings
Exon boundary   No-No
Splicing signals   TG-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCGACCAAGAGCTATGGACATACAGAGGCAAATGCGTAGTGTAAAGAACGAGATCTAAAGTA
ATAAAGCTCAAAACTTTGACTTGGAAGAACACATACagaacaaaatctaaaaaactcggaaaaa
acgaatgtaacagtctaagctgagaccaaaacaaaagagcactttttcaccaaaacaacatcaa
accaaaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 256
Transcript exons: 971821-972076
AGAACAAAATCTAAAAAACTCGGAAAAAACGAATGTAACAGTCTAAGCTGAGACCAAAACAAAA
GAGCACTTTTTCACCAAAACAACATCAAACCAAAAATAGTAGTCTTGTGACTGACAAAGACTCA
ATTTTTATGAGTATAGATCTCAAATTGAAATCGACCAAGAGCTATGGACATACAGAGGCAAATG
CGTAGTGTAAAGAACGAGATCTAAAGTAATAAAGCTCAAAACTTTGACTTGGAAGAACACATAC

Genomic sequence AGAACAAAATCTAAAAAACTCGGAAAAAACGAATGTAACAGTCTAAGCTGAGACCAAAACAAAA
GAGCACTTTTTCACCAAAACAACATCAAACCAAAAATAGTAGTCTTGTGACTGACAAAGACTCA
ATTTTTATGAGTATAGATCTCAAATTGAAATCGACCAAGAGCTATGGACATACAGAGGCAAATG
CGTAGTGTAAAGAACGAGATCTAAAGTAATAAAGCTCAAAACTTTGACTTGGAAGAACACATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.272747329
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017