Detail information of AT2G03220_circ_g.2


General Information
CircRNA Name AT2G03220_circ_g.2
ID in PlantcircBase ath_circ_012661
Alias Ath_circ_FC1151
Organism Arabidpsis thaliana
Position chr2: 971822-972080  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ
Parent gene AT2G03220
Parent gene annotation Glycosyltransferase (Fragment)
Parent gene strand -
Alternative splicing AT2G03220_circ_g.1
Support reads 4
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered AT2G03220.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACCAAGAGCTATGGACATACAGAGGCAAATGCGTAGTGTAAAGAACGAGATCTAAAGTAATAA
AGCTCAAAACTTTGACTTGGAAGAACACATACTGATgaacaaaatctaaaaaactcggaaaaaa
cgaatgtaacagtctaagctgagaccaaaacaaaagagcactttttcaccaaaacaacatcaaa
ccaaaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAACAAAATCTAAAAAACTCGGAAAAAACGAATGTAACAGTCTAAGCTGAGACCAAAACAAAAG
AGCACTTTTTCACCAAAACAACATCAAACCAAAAATAGTAGTCTTGTGACTGACAAAGACTCAA
TTTTTATGAGTATAGATCTCAAATTGAAATCGACCAAGAGCTATGGACATACAGAGGCAAATGC
GTAGTGTAAAGAACGAGATCTAAAGTAATAAAGCTCAAAACTTTGACTTGGAAGAACACATACT
GAT
Conservation Information
Conserved circRNAs NA
PMCS 0.154792791
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a