Detail information of Zm00001d013083_circ_g.2


General Information
CircRNA Name Zm00001d013083_circ_g.2
ID in PlantcircBase zma_circ_001875
Alias circ862
Organism Zea mays
Position chr5: 4467552-4470794  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRI
Parent gene Zm00001d013083
Parent gene annotation 5'-3' exoribonuclease 4
Parent gene strand -
Alternative splicing Zm00001d013083_circ_g.1 Zm00001d013083_circ_g.3 Zm00001d013083_circ_g.4 Zm00001d013083_circ_g.5
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d013083_T022:1
Zm00001d013083_T015:8
Zm00001d013083_T003:8
Zm00001d013083_T024:1
Zm00001d013083_T020:1
Zm00001d013083_T001:8
Zm00001d013083_T005:8
Zm00001d013083_T019:8
Zm00001d013083_T017:8
Zm00001d013083_T010:8
Zm00001d013083_T011:8
Zm00001d013083_T023:1
Zm00001d013083_T025:1
Zm00001d013083_T007:8
Zm00001d013083_T002:8
Zm00001d013083_T004:8
Zm00001d013083_T021:1
Zm00001d013083_T009:8
Zm00001d013083_T014:8
Zm00001d013083_T006:8
Zm00001d013083_T008:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCACAGTAGATGGTCAATATTTACCTACCACTGCCATGAACAAACACCTTGATAGTAGTATCT
CATAACCCAACAAAGACCTTCCACGTATTTCTGGACccttcgcaggtatgatgacccccgctgg
aggctctgggatgtgtttgtgatactgaggattgagataggcagcattcctgaaaaaatgtaga
aaaaatta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCGCAGGTATGATGACCCCCGCTGGAGGCTCTGGGATGTGTTTGTGATACTGAGGATTGAG
ATAGGCAGCATTCCTGAAAAAATGTAGAAAAAATTATAAATATAGTTCTAGTAGATTTAAAGGG
TAGCTTTTAGTTTACAATATGCCTTTACACGATAAGATGCTTACAAAACTCTGTTCTGAGCAAT
GCCATTGAACCCCTTAACTGGAGAAGTGACAGTGACACTATACCAGTTCCTTTCAGATAAACAT
AGGAATCCATTCATTCCACCACTGCATATAGTCGACATATCCAAAACAGTAAATAAATGAGGGC
AAAATAATCCAAAACAATGTATCTAACATTCTACCAACCTAGCAGCAGGCTCAATGGGAATAAC
ATAAGGGTCTGTTCTTGATAGATGGTAATAGTTCTGATACAGGAAGATAATCTGAGTGATCAAT
GGATGAGTATCTCTAACGTAAATTATGTCAAGCATAGTCCTATTCCTGAATTTCTCTTCTTCCT
GCGAAAGCCAGCAAAAATAAAGCTCAGCCAAAATGGAAGTCACAAGCCCAGATGGTTAAAAAAT
AAGGATTGTAACATATACATACTGTCAAAGTATCTTCAAGTTTTCTTGTTTCCGCAAGCAGACG
CCTTTCATCAATAAAAGGCAATTTTGCAACACCCTGAGTAAAAGAGAACATAAACATTTCTACA
TAACACAATTAGTAGCCTGAAAGAAGAATGATTTACTCATTTGCATTACCTGCCATGCAAAACG
TTTCCCATTCATGTCTATCTCAAAATCTGCAGGTACAATATAAGGCTTTAGAAGCAATGGATAA
ATATGATTTTATGGATACACAATATCACCCTATGCATGGGGCAGTTTTCAGGTAATTTCGTTTT
TGCTTTACAAAATAGATGGTGATACCTTTTGGGTAGAAAGACTTCAACGGTGAATCTGGATCAC
TCATCAAATCCCCATAGTATTTTGGCAGTGCATTGGAGCTACAGAAAAAAAAAATAGCGGACAT
CTCAGAATCATTGCTTTGACATTCTTTCCATCTGAACGTGGAACAGATTCATTTGCATAAGGGG
GCAGACCTTGCAGCTGGTAGGGTTCCCATTAGTTGATCAAATGGCTTGAAAGGTTGACCCAAAA
AAAAGGTTATTTCCAATTCAGCCAAGCCTTTTAGATCAGATGCGAAAGGCGCATAATGATAGGG
ATAAAACCTGACGTGTGGATGAAAAGCCATGGTTAACATTTGACCTAAAGAAGAGCACGTGTGC
TTCTGAGAAGAGCATGTCAATCTATGCATGTTGGTTATGGCAGAGGTAAAAAGGGTTTGCCAAA
TTATTGATTTATGTAAAACAGTGAACCCTGAATATCAGTAAGTTGCCATCAACGCACAAACAAC
AGAAAACAGTGTCAGGAAACAGGTGCAAATCACTAAAGACATGAGCCATATCTAACTGCACCAC
CTATTTTGGAGATTCCACAACCACAACTGCAGCATAGCTTGTTGCATGGCAGACAAATAGCAGA
GTTTTTTGTTCTGCGGTCATTAATTTTGGTTTGCAAGTCGTAGAAGAGGATGTTGACATGAACA
TAGCTTGTTGCATGTGCAGAATTACGGCATATGGTAGTATCAATGAAATCAGGGGTCCGAATTG
GGTCATCTGGTTAGTGGTTACCATAAAATTAGATCTTAGATGTATATATCGCATCTATTTGTGT
AGTTAAAAAACTTTAAGAGAACCTACCTAAAGTGGACATAATGTTTTAGTGCAAGCCATTGATA
AAATTAGAAGAAGTTTCCTTTGGAGAGGGCGCAAGGAGGCCAGAGGTGGTCACTGCCTGGTGGC
CTGGGGCAGAGTCTGTAGACCCCTACAGCTGGGCGGTCTTGGCATTTCTAGTCTTAAAGAACTT
ATCCGGGCCCTGCGCATGAGATGGCTTTGGCTCCAAAAGACTAAGCCTAACCGACCTTGGTGCA
GCCTTCCTATCCAGGTTCCAGATAAAGCAAGGGTTTTCTTCTCGATGGTGTTGACTTCAAAGGT
TGGTAATGGGGCTAATACTTTGTTCTGGACTGATAAATGGATTCATGGGCAGAAAATTGCAGAT
TTGGTTCCTAAATTATTTGATATCATTCCAAAAAAAATCACTAACAGAAGGACGGTTCAGGAAG
CATTGACAGATAGAAGATGGATTGCTGATATCACAGGATCACTCTCGGTGGGAGTATTATTGGA
TTATCTTCATCTTTGGAATTTAATTTCAGATTTTGAGCTGCTGCCAGACATAGAAGATAAACAT
ACTTTTAGTATTGCTGCAAATGGGACTTATTCTGCTAAGGCTGCATATGATGGGTTGTTCATCG
GGTCTGTGCATTTCGGTCACTATGAAAGAGTTTGGAAAACTTGGGCCCCCTCTAAATGCCACTT
CTTCCTCTGGCTATCAGTGCTAAATAAATGCTGGACAGCAGATAGGTTGGCAAATAGAGGACTT
GATCATCCGGAGAAGTGTCCGCTTTGTGACCAAGAGTCCGAAACTTTGGATCATATTTTGGTTT
CTTGTGTTTTTGCGAGAGAATTCTGGTTCCGGCTGATGTGCATTTTCAAACTACAAAATCTGGC
TCCTACACCTAGTACGGTGTCTTTTACGGGTTGGTGGTAGATGATTGACAATGGCTCTGGAGAT
ATGATTATGAAGGGTGTCAACTCCCTTATTGCCTTGGGAGCCTGGATTATTTGGAATCATCGGA
ATCGAATTGTCTTTGATGGAATCTCCCCTAGTGTTTCTGCAGCTCTTTGTCAGGCAAGGGAGGA
ACAGCAGTTGTGAGAAATGGCAGGAGCTAAGGGTCTCTCCTTTCTTGCCGCAACCATCAGGGGC
ACCTAGCTGCCTGGTTTATCGTTGATGGGCTGGTTTTGTTTTTCAGGAACTGTTTGTTCTTGTT
TTTTTCTCTTCTTTTTTCTTTGGTTTTTTATCCCCTCTGGGGAGGTCTTTTGTACTATGGTCTA
TTTTGGACCCTCTTTTCCTTCTACTTAATATAATGATGCGCAGTTCTCCTGCGCTTTCGAGAAA
AAGTGAAGAATAATACTTTCACACTCAATCAAGTGATGTTTTATCTTCCACAGGAAATGCAATA
GCAAATTCTCACAGTAGATGGTCAATATTTACCTACCACTGCCATGAACAAACACCTTGATAGT
AGTATCTCATAACCCAACAAAGACCTTCCACGTATTTCTGGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.035287265
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b