Detail information of Zm00001d013083_circ_g.5


General Information
CircRNA Name Zm00001d013083_circ_g.5
ID in PlantcircBase zma_circ_001876
Alias circ863
Organism Zea mays
Position chr5: 4470723-4472379  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d013083
Parent gene annotation 5'-3' exoribonuclease 4
Parent gene strand -
Alternative splicing Zm00001d013083_circ_g.1 Zm00001d013083_circ_g.2 Zm00001d013083_circ_g.3 Zm00001d013083_circ_g.4
Support reads 7
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d013083_T014:2
Zm00001d013083_T001:1
Zm00001d013083_T011:2
Zm00001d013083_T019:2
Zm00001d013083_T017:2
Zm00001d013083_T002:2
Zm00001d013083_T008:3
Zm00001d013083_T021:1
Zm00001d013083_T023:1
Zm00001d013083_T025:1
Zm00001d013083_T006:2
Zm00001d013083_T003:3
Zm00001d013083_T007:2
Zm00001d013083_T009:2
Zm00001d013083_T004:2
Zm00001d013083_T010:2
Zm00001d013083_T015:3
Zm00001d013083_T020:1
Zm00001d013083_T022:1
Zm00001d013083_T024:1
Zm00001d013083_T005:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACATCTCTCCGAACTTGAACAATGGGTTTTGATTCTGCCTCTTCTTTAAACTTATCAGCATA
ATAACGCTCCCTGTATCCTGGCTCTCCTAACTTCACccactgccatgaacaaacaccttgatag
tagtatctcataacccaacaaagaccttccacgtatttctggacctgaaatatgcatagataat
agacaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACTGCCATGAACAAACACCTTGATAGTAGTATCTCATAACCCAACAAAGACCTTCCACGTAT
TTCTGGACCTGAAATATGCATAGATAATAGACAAATGAAGACAACAACACGGGACCCATGTTGA
CAACAAATGGCAACCGAATAGCAGTAGACAGTATGCGTAACCACCTATTCCTACCACAGAATGG
AAGAAAACATCACAACAACAAAGCCTTTATCCCAAGCAAGTTGGGGTAGACTAGAGAATGAACC
CAACACTAAGTAGGCCATGGCTCAGGTATGTGGATTGTAAAATGTAAATTCACTTTGTGTGCTA
CACTGCTACTACATCTTTTATTTGGGTTTCATCTGATGGCTGGATTTCAAAGTTGTTAAGGGGG
TAAGACGACTGACCTCCTTTTTACCTTTTAAGCGGTAAAGCGTAAGGCGAGTCGACGCCTTAAA
TATATTTAAAAATAGAAAAATGTTGATATTTGAGAAAGTGTCTAGGACAAAAATATTAATAAAG
AAGAGGAAAAGGATAAAGAAAAGAAAAAGAATAGCTCAGCCGGCCCAAGTCAGCCCACCCTGGC
CCATTAAAATTACGTTAGCCCGCTTATTCACTCCTTCCTAGCCTTCCCCCTCTCCCAGGCGCAC
CAAAGTCTCCTTCTCTCTCTCCAACCGCACCAGCCGCCTTCCTCTCTCCCCTCCCAGCGCGCGC
TCTCTCTCCCGAGAAATTCCTCTCTCCCAGACGCTTCTCCCTCTCTCCCAGCCACACCAGCGCC
TCCCTCCCTCTCCCCGCTTCTCCCGCTCTCTCGCAGCCACCGCCGTCACCCCGACCTCGTCGTC
GCGCCGCCCTCCGATGCGCTGCAGCAGCAGCCGTGCTGCAGCTCGCAGCCGCCTTAGGCTCTAG
AGCAAGGCGAGGAGGACGCTTTACGTCCCTGGCTCGCCTTACCGCCTAGGTGCCGCTTCGCCTT
GACAACTATGCTGGATTTTTACTACGGCTCATCCAACCTCATGACCTTCCTTTCCCTTGACTTG
GGACCAGTATTTTTAAACAAGATAGATAGAATTAAAAAATAAAAATTCACTTTGGATGTAAAAT
AATTTATAGCATTATAGTAGGTTGACACCAACCCGTAAAACCAAACTAAAAGCATTTAAATCAA
GTCAAGTTTTTCCCTAAGCAAAGCCAGATCAACCTTATTAGCATATTGTGCAAATTGATCATGC
AACAAACACGTCAAAACAGCTGGCTGCTTGTTCCAGCCTGTAGAGTGTATGGAAATGTAGAGTG
TGAACTATTGTGGCAAGGAGAAAAGAGGCATCTCAATTGTTGACTCAGTCCATAATTATTTCCA
ATGCAAAAACGTCAATATTAGTCCAGTTATTAATTGTAAGTCGTAGCTGTTTATGTTGTCAAGG
AGCAACATTCAGAACCTGGTTGTTGGGTATTTATTATCTGGCAAACCTTTCATAAATCCATTGG
CGATGTTTTGGTGGTAACATTTAGGCACTGAGTTAGAAGTCGCTGTGATTCCACAAATCAAAAT
GGTGTCTGGCAAGAAAACTCACAACATCTCTCCGAACTTGAACAATGGGTTTTGATTCTGCCTC
TTCTTTAAACTTATCAGCATAATAACGCTCCCTGTATCCTGGCTCTCCTAACTTCAC
Conservation Information
Conserved circRNAs osa_circ_022259
PMCS 0.049856417
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b