Detail information of BGIOSGA031781_circ_g.2


General Information
CircRNA Name BGIOSGA031781_circ_g.2
ID in PlantcircBase osi_circ_008455
Alias Chr10:18349539_18352094(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15222682-15224020  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2
Parent gene BGIOSGA031781
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031781_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-TA
Number of exons covered BGIOSGA031781-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTCGGAGCGAGCGGCGAGCGGCAGCGGCGGAGCGGCGCGGCAGCAGCACCGCCAGCGTCGGAG
CGAGCGGCGACGGCAGCGCGGACGGCGCGCAGCAACccttgagatgttgaaggtttccaaaagc
ctctggcagttcagccaaaagatttgatgacaaatcaacctaatgaaattaaaaattttgatga
accagaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGAGATGTTGAAGGTTTCCAAAAGCCTCTGGCAGTTCAGCCAAAAGATTTGATGACAAATC
AACCTAATGAAATTAAAAATTTTGATGAACCAGAAATTGCCATATGGAAACTCAGAAGAGCTAA
GTGCTCAGTATGGCCTAGAACTAGAAGGAAAACTGAAACAGAAATAAAGCACACACCTCATTGA
GAGATTCACAACCACCTATAGATGAAGGCAATGAAGTTATCCTGCCAACAAGTGAAATTGTAGC
AGTGTGGAAGTCAGGATACCTTTCAATTCTCAAAAAAAAAGTAATCATGTAAATTCTCATTAGA
AGTATAAGAAAAGACATATTTTCTGGCTTGATAGAATACATTTTCTTTAAAAGTTTTTCTATAA
TGGAACTGCTCACAGGCTGAAAGTCTCACATGATTGTGAAAAATCTATCAACAACTATATTATA
TACAGAAATCCTCTCTTGAGGTAACTCTTCACATTAGCACAAAGTGTAAATTATGCTATAAGCA
TAGCAAAAAAATGAGACTTCAATGAGTCACTTCAGTTAAGCACTAGTAGCACAGTACCTATTAT
TATTTGCTATCAGAATCTCAAGATGCTTCAGTAACCCTATTTCAACAGGTAAGTTCTCAAGCCT
GTTATTTGCAATACGAAGTTCACGTAAATGAGTTATTGAGCCCAAACTTGAAGGTAAAGTGACC
AGCCTGCATGAAAAATTATAAATTTAGAACATATCATCTCGTCATCTTCAATTCTAAACAATAA
TGGCGGACATGAAACTTCCTAATGGATAAAGACCTAAGGTCTACTGTGCCTTGCCAGCAGGCCC
ATAATCTGCTACCGTGGACAGGTTGCCCTGGCACCTTTGATATTGCTGGCCCAGCATGACACGG
GTGCTGGCACAAGACAGGAAAATTAAGGGATACAAGAACAATTTGCACCACATAAACCACTGAG
ATAAACTGAGCACCTCAAGGCCTTTCCAGTTATTCAAGAAAAAACAAGGGTTAATTAGATACAT
ACCATTAAAAATTTATCAGTTTTGAAATATACCATCAGTATTCGCGTATTTGGAACCATGTCAT
TACAATTTTACACATATTCAAGATATGCCACTACCTACCATTTACGAAAAAATTTGGACCAAAT
TACCCTTCTTTGCTTCTTTTTCTCCCCTCTCCTTTCTTCCACAGCTCAGAGAACAGGTGGCGGC
GGAGCGAGCGGCAGCAGCGGCAGCGTCGGAGCGAGCGGCGAGCGGCAGCGGCGGAGCGGCGCGG
CAGCAGCACCGCCAGCGTCGGAGCGAGCGGCGACGGCAGCGCGGACGGCGCGCAGCAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021