Plant Circular RNA Database

Detail information of Os07g0672500_circ_g.11

			
						 General Information
					
						CircRNA Name
						Os07g0672500_circ_g.11
					
						ID in PlantcircBase
						osa_circ_035250
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 28429945-28432472  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0672500						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os07t0672500-01);ATPase, AAA-type,
 core domain containing protein. (Os07t0672500-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os07g0672500_circ_g.1 Os07g0672500_circ_g.2 Os07g0672500_circ_g.3 Os07g0672500_circ_g.4 Os07g0672500_circ_g.5 Os07g0672500_circ_g.6 Os07g0672500_circ_g.7 Os07g0672500_circ_g.8 Os07g0672500_circ_g.9 Os07g0672500_circ_g.10 Os07g0672500_circ_g.12 Os07g0672500_circ_g.13 Os07g0672500_circ_g.14 Os07g0672500_circ_g.15 						
					
						Support reads
						2
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0672500-02:10

General Information
CircRNA Name	Os07g0672500_circ_g.11
ID in PlantcircBase	osa_circ_035250
Alias	NA
Organism	Oryza sativa
Position	chr7: 28429945-28432472 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0672500
Parent gene annotation	Hypothetical conserved gene. (Os07t0672500-01);ATPase, AAA-type, core domain containing protein. (Os07t0672500-02)
Parent gene strand	+
Alternative splicing	Os07g0672500_circ_g.1 Os07g0672500_circ_g.2 Os07g0672500_circ_g.3 Os07g0672500_circ_g.4 Os07g0672500_circ_g.5 Os07g0672500_circ_g.6 Os07g0672500_circ_g.7 Os07g0672500_circ_g.8 Os07g0672500_circ_g.9 Os07g0672500_circ_g.10 Os07g0672500_circ_g.12 Os07g0672500_circ_g.13 Os07g0672500_circ_g.14 Os07g0672500_circ_g.15
Support reads	2
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0672500-02:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGACATTGGAGCACTAGAAAATGTCAAGGAAACTTTGAAGGAACTAGTGATGCTTCCGTTGCAA
AGGCCCGAATTGTTCTCCAAAGGACAACTTATGAAGagctccagattatggctcacaaggtgaa
gttaggcttccttttgaggaaaatgaatcctcgaaagttggagtcagatttgataaaaagattc
ctggtggc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1087
Transcript exons: 28429945-28430093,28430237-28430307,28430383-28430553,28
430634-28430702,28431005-28431106,28431186-28431275,2843
1638-28431716,28431816-28431915,28432016-28432091,284322
93-28432472
AGCTCCAGATTATGGCTCACAAGGTGAAGTTAGGCTTCCTTTTGAGGAAAATGAATCCTCGAAA
GTTGGAGTCAGATTTGATAAAAAGATTCCTGGTGGCATTGATCTTGGAGGCAATTGCGAGGTTG
ACCGTGGTTTCTTTTGTCCAGTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGC
TAAACATCCATTTGATGTAATATACGAGTTTGCTTCCGAAGAAAGTCAGCATGGTCCTCTGATA
CTATTTTTGAAGGATGTTGAGAAAATGTGTGGAAACAGTTACTCCTATCATGGCTTAAAGAATA
AGATTGAAAGTTTCCCAGCTGGTGTTTTTATTGTTGGGTCCCAGATCCATACTGACAGTCGGAA
AGACAAGTCAAACAGTGGCTCTCCTTTCCTTTCAAAATTCCCATACAGCCAAGCAATACTCGAC
CTCACCTTCCAGGATAGCTTTGGTCGGGTGAATGATAAAAACAAAGAGGCTCTGAAGATAGCGA
AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGGATGAATTGGAACT
CTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCA
AAGATCCAGTCGTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGTG
TTAAAGATCGAATCCTTACAAATGAATGCGTCGATAAAGTCGTTGGTTATGCTTTGAGTCATCA
ATTTAAACATAGCACAATCCCAACTCGTGAAAATGATGGATTACTTGCCCTTTCTGGTGAAAGC
CTTAAGCATGGAGTTGAGCTGTTGGATAGCATGCAAAGTGACCCTAAAAAGAAGAGCACAAAAA
AATCACTTAAGGATGTAACGACAGAGAATGAATTCGAAAAACGGCTTCTTGGTGATGTGATCCC
TCCAGATGAGATAGGTGTTACCTTTGAGGACATTGGAGCACTAGAAAATGTCAAGGAAACTTTG
AAGGAACTAGTGATGCTTCCGTTGCAAAGGCCCGAATTGTTCTCCAAAGGACAACTTATGAAG
						
					

						Genomic sequence
						
							AGCTCCAGATTATGGCTCACAAGGTGAAGTTAGGCTTCCTTTTGAGGAAAATGAATCCTCGAAA
GTTGGAGTCAGATTTGATAAAAAGATTCCTGGTGGCATTGATCTTGGAGGCAATTGCGAGGTTG
ACCGTGGTTTCTTTTGTCCAGGTGAGCCTGTTTGCTCTTGTGCTCCTATGCCTTAAATAATTTA
TACCTATATCATACATAGATTCTGTAATTTGGCATTTATTACTATATTTGATATAATGTAAATT
TGAAATTCACTTGTTTATGTTTCCTTGTATCTCCAGTTGATTCTCTTTGCCTCGATGGCCCAGG
ATGGGAAGATAGAGCTAAACATCCATTTGATGTAATATACGAGGTGTGTGCAGTCCTTTTTGGC
TATGTTTGTTGGTGTTCCAATTCTTCTCTTTTTACTTACTGGTTCTTTCTACAGTTTGCTTCCG
AAGAAAGTCAGCATGGTCCTCTGATACTATTTTTGAAGGATGTTGAGAAAATGTGTGGAAACAG
TTACTCCTATCATGGCTTAAAGAATAAGATTGAAAGTTTCCCAGCTGGTGTTTTTATTGTTGGG
TCCCAGATCCATACTGACAGTCGGAAAGACAAGGTACTGCTGCTTGTAAGAATCATTATAACTA
GTATAATTTTACTTGTTTCCATCTAGCTAACAATTTTTTTTTCATACAGTCAAACAGTGGCTCT
CCTTTCCTTTCAAAATTCCCATACAGCCAAGCAATACTCGACCTCACCTTCCAGGTGTGTTTTT
CTAGTTTTACTGAAGTATCTTGCAATTGATGTTTGTGTACATTAAGCCAAATCCTGTTCTTCTA
CAGTTGTGCTCATATTCTTGTGAATTTCTTTGGTTACCCCATGGTTAACTTAGGATATAATAGT
TATAACAGTATGCAGAAGATGTCTGATGTTCCTTATTGCAATGGTCACTAGTTACTAGTAACAC
AGCATTCTCAACTTCCTTTTCATTGTTGAAGTACAGGTTATTTCTTATCTGAATTATTGTGATT
GAACTCCACTTGTTACAATCTGATGAATTAATGCAGGATAGCTTTGGTCGGGTGAATGATAAAA
ACAAAGAGGCTCTGAAGATAGCGAAGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACA
AACACCGCAGGTGTGTCATTTGTGTTATTATAGGGCGACATTTACTTTCAGGCACTGCCTCTTT
CAAGTTTTAACTCTGAGAAATACAGGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGAC
CGTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGGTAAGTATCGATG
GTGTAGACAACTTTGTACATATATATGTATATTTAATTAGCTGTCTGTTTAGTTATTGTTATTC
TGTTATGTTTATGGCCTTACGGGTCCAGGTGTGTTTAATACTGAAATTATATTTGATCCGTAAA
GGCTTTTCAAAAGTGCTACCATGTATGTACCCTTCAATTTCCAGATAATTGTTTGGTTACAAGC
CCCCTTGGTTTAAGAATCATGCATGTTGCATATCTATGACACGAGATTCACTTGATAACTGAAA
AAGTGAAAATAATTTCACACCTGCCAACTCCTTATGCTGTTTCTTACTTAATATTTCTGATTCC
ATTGTATGTATTTCTGCAACTGGATGTAGTTCTTAACCCGCAATGGTCTGGAATGTGCTGACAT
AGAGACATCAGCATGTGTTAAAGATCGAATCCTTACAAATGAATGTGAGTACAGTCCTACATTT
GTAATCCTGCATAATTTTGTTCTGTGGCATAATTGATCTGCTCTTCTTATTTTCTTATTTTGCT
CTGTTTTGTTTTCAGGCGTCGATAAAGTCGTTGGTTATGCTTTGAGTCATCAATTTAAACATAG
CACAATCCCAACTCGTGAAAATGATGGATTACTTGCCCTTTCTGGTGAAAGGTATGCTCTCTAA
CCCTGTAATATTTTACATTGTTGTGTAAGAAAGATTAACTTCTGGTCTATCTCATGTCTGCTTT
ACTGAAAATTTCTATATTTGCAGCCTTAAGCATGGAGTTGAGCTGTTGGATAGCATGCAAAGTG
ACCCTAAAAAGAAGAGCACAAAAAAATCACTTAAGGTAACTTCTATTCTTTAACCGTTTAGATC
GCCAAATATATGTTATGACTAGACTGGCAACTGGCAGCCTGGCCCAACTTCTTGTTTGTATCCT
GACTGTTCTAGAGTTTTGCAAGCAAACAGTAATGACATGATTTTTGGGCTTTGGGGCTATTCAT
GTTAACTGTGCTTACAGCTTACATACACCCACTGTTATTTTTAGGATGTAACGACAGAGAATGA
ATTCGAAAAACGGCTTCTTGGTGATGTGATCCCTCCAGATGAGATAGGTGTTACCTTTGAGGAC
ATTGGAGCACTAGAAAATGTCAAGGAAACTTTGAAGGAACTAGTGATGCTTCCGTTGCAAAGGC
CCGAATTGTTCTCCAAAGGACAACTTATGAAG
						
					

			
		

Sequences
Splice junction sequence	GGACATTGGAGCACTAGAAAATGTCAAGGAAACTTTGAAGGAACTAGTGATGCTTCCGTTGCAA AGGCCCGAATTGTTCTCCAAAGGACAACTTATGAAGagctccagattatggctcacaaggtgaa gttaggcttccttttgaggaaaatgaatcctcgaaagttggagtcagatttgataaaaagattc ctggtggc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1087 Transcript exons: 28429945-28430093,28430237-28430307,28430383-28430553,28 430634-28430702,28431005-28431106,28431186-28431275,2843 1638-28431716,28431816-28431915,28432016-28432091,284322 93-28432472 AGCTCCAGATTATGGCTCACAAGGTGAAGTTAGGCTTCCTTTTGAGGAAAATGAATCCTCGAAA GTTGGAGTCAGATTTGATAAAAAGATTCCTGGTGGCATTGATCTTGGAGGCAATTGCGAGGTTG ACCGTGGTTTCTTTTGTCCAGTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGC TAAACATCCATTTGATGTAATATACGAGTTTGCTTCCGAAGAAAGTCAGCATGGTCCTCTGATA CTATTTTTGAAGGATGTTGAGAAAATGTGTGGAAACAGTTACTCCTATCATGGCTTAAAGAATA AGATTGAAAGTTTCCCAGCTGGTGTTTTTATTGTTGGGTCCCAGATCCATACTGACAGTCGGAA AGACAAGTCAAACAGTGGCTCTCCTTTCCTTTCAAAATTCCCATACAGCCAAGCAATACTCGAC CTCACCTTCCAGGATAGCTTTGGTCGGGTGAATGATAAAAACAAAGAGGCTCTGAAGATAGCGA AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGGATGAATTGGAACT CTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCA AAGATCCAGTCGTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGTG TTAAAGATCGAATCCTTACAAATGAATGCGTCGATAAAGTCGTTGGTTATGCTTTGAGTCATCA ATTTAAACATAGCACAATCCCAACTCGTGAAAATGATGGATTACTTGCCCTTTCTGGTGAAAGC CTTAAGCATGGAGTTGAGCTGTTGGATAGCATGCAAAGTGACCCTAAAAAGAAGAGCACAAAAA AATCACTTAAGGATGTAACGACAGAGAATGAATTCGAAAAACGGCTTCTTGGTGATGTGATCCC TCCAGATGAGATAGGTGTTACCTTTGAGGACATTGGAGCACTAGAAAATGTCAAGGAAACTTTG AAGGAACTAGTGATGCTTCCGTTGCAAAGGCCCGAATTGTTCTCCAAAGGACAACTTATGAAG
Genomic sequence	AGCTCCAGATTATGGCTCACAAGGTGAAGTTAGGCTTCCTTTTGAGGAAAATGAATCCTCGAAA GTTGGAGTCAGATTTGATAAAAAGATTCCTGGTGGCATTGATCTTGGAGGCAATTGCGAGGTTG ACCGTGGTTTCTTTTGTCCAGGTGAGCCTGTTTGCTCTTGTGCTCCTATGCCTTAAATAATTTA TACCTATATCATACATAGATTCTGTAATTTGGCATTTATTACTATATTTGATATAATGTAAATT TGAAATTCACTTGTTTATGTTTCCTTGTATCTCCAGTTGATTCTCTTTGCCTCGATGGCCCAGG ATGGGAAGATAGAGCTAAACATCCATTTGATGTAATATACGAGGTGTGTGCAGTCCTTTTTGGC TATGTTTGTTGGTGTTCCAATTCTTCTCTTTTTACTTACTGGTTCTTTCTACAGTTTGCTTCCG AAGAAAGTCAGCATGGTCCTCTGATACTATTTTTGAAGGATGTTGAGAAAATGTGTGGAAACAG TTACTCCTATCATGGCTTAAAGAATAAGATTGAAAGTTTCCCAGCTGGTGTTTTTATTGTTGGG TCCCAGATCCATACTGACAGTCGGAAAGACAAGGTACTGCTGCTTGTAAGAATCATTATAACTA GTATAATTTTACTTGTTTCCATCTAGCTAACAATTTTTTTTTCATACAGTCAAACAGTGGCTCT CCTTTCCTTTCAAAATTCCCATACAGCCAAGCAATACTCGACCTCACCTTCCAGGTGTGTTTTT CTAGTTTTACTGAAGTATCTTGCAATTGATGTTTGTGTACATTAAGCCAAATCCTGTTCTTCTA CAGTTGTGCTCATATTCTTGTGAATTTCTTTGGTTACCCCATGGTTAACTTAGGATATAATAGT TATAACAGTATGCAGAAGATGTCTGATGTTCCTTATTGCAATGGTCACTAGTTACTAGTAACAC AGCATTCTCAACTTCCTTTTCATTGTTGAAGTACAGGTTATTTCTTATCTGAATTATTGTGATT GAACTCCACTTGTTACAATCTGATGAATTAATGCAGGATAGCTTTGGTCGGGTGAATGATAAAA ACAAAGAGGCTCTGAAGATAGCGAAGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACA AACACCGCAGGTGTGTCATTTGTGTTATTATAGGGCGACATTTACTTTCAGGCACTGCCTCTTT CAAGTTTTAACTCTGAGAAATACAGGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGAC CGTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGGTAAGTATCGATG GTGTAGACAACTTTGTACATATATATGTATATTTAATTAGCTGTCTGTTTAGTTATTGTTATTC TGTTATGTTTATGGCCTTACGGGTCCAGGTGTGTTTAATACTGAAATTATATTTGATCCGTAAA GGCTTTTCAAAAGTGCTACCATGTATGTACCCTTCAATTTCCAGATAATTGTTTGGTTACAAGC CCCCTTGGTTTAAGAATCATGCATGTTGCATATCTATGACACGAGATTCACTTGATAACTGAAA AAGTGAAAATAATTTCACACCTGCCAACTCCTTATGCTGTTTCTTACTTAATATTTCTGATTCC ATTGTATGTATTTCTGCAACTGGATGTAGTTCTTAACCCGCAATGGTCTGGAATGTGCTGACAT AGAGACATCAGCATGTGTTAAAGATCGAATCCTTACAAATGAATGTGAGTACAGTCCTACATTT GTAATCCTGCATAATTTTGTTCTGTGGCATAATTGATCTGCTCTTCTTATTTTCTTATTTTGCT CTGTTTTGTTTTCAGGCGTCGATAAAGTCGTTGGTTATGCTTTGAGTCATCAATTTAAACATAG CACAATCCCAACTCGTGAAAATGATGGATTACTTGCCCTTTCTGGTGAAAGGTATGCTCTCTAA CCCTGTAATATTTTACATTGTTGTGTAAGAAAGATTAACTTCTGGTCTATCTCATGTCTGCTTT ACTGAAAATTTCTATATTTGCAGCCTTAAGCATGGAGTTGAGCTGTTGGATAGCATGCAAAGTG ACCCTAAAAAGAAGAGCACAAAAAAATCACTTAAGGTAACTTCTATTCTTTAACCGTTTAGATC GCCAAATATATGTTATGACTAGACTGGCAACTGGCAGCCTGGCCCAACTTCTTGTTTGTATCCT GACTGTTCTAGAGTTTTGCAAGCAAACAGTAATGACATGATTTTTGGGCTTTGGGGCTATTCAT GTTAACTGTGCTTACAGCTTACATACACCCACTGTTATTTTTAGGATGTAACGACAGAGAATGA ATTCGAAAAACGGCTTCTTGGTGATGTGATCCCTCCAGATGAGATAGGTGTTACCTTTGAGGAC ATTGGAGCACTAGAAAATGTCAAGGAAACTTTGAAGGAACTAGTGATGCTTCCGTTGCAAAGGC CCGAATTGTTCTCCAAAGGACAACTTATGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007428* 						
					
						PMCS
						0.217898731

Conservation Information
Conserved circRNAs	osi_circ_007428*
PMCS	0.217898731

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							28430444-28429968(+)
						
						Potential amino acid sequence
						
							MCGNSYSYHGLKNKIESFPAGVFIVGSQIHTDSRKDKSNSGSPFLSKFPYSQAILDLTFQDSFG
RVNDKNKEALKIAKHLTKLFPNKVTIQTPQDELELSQWKQLLDRDVEILKAKANTSKIQSFLTR
NGLECADIETSACVKDRILTNECVDKVVGYALSHQFKHSTIPTRENDGLLALSGESLKHGVELL
DSMQSDPKKKSTKKSLKDVTTENEFEKRLLGDVIPPDEIGVTFEDIGALENVKETLKELVMLPL
QRPELFSKGQLMKSSRLWLTR*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	28430444-28429968(+)
Potential amino acid sequence	MCGNSYSYHGLKNKIESFPAGVFIVGSQIHTDSRKDKSNSGSPFLSKFPYSQAILDLTFQDSFG RVNDKNKEALKIAKHLTKLFPNKVTIQTPQDELELSQWKQLLDRDVEILKAKANTSKIQSFLTR NGLECADIETSACVKDRILTNECVDKVVGYALSHQFKHSTIPTRENDGLLALSGESLKHGVELL DSMQSDPKKKSTKKSLKDVTTENEFEKRLLGDVIPPDEIGVTFEDIGALENVKETLKELVMLPL QRPELFSKGQLMKSSRLWLTR*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0672500_circ_g.11

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