Detail information of Os07g0672500_circ_g.2


General Information
CircRNA Name Os07g0672500_circ_g.2
ID in PlantcircBase osa_circ_035241
Alias Os07circ20289/Os_ciR198,
Organism Oryza sativa
Position chr7: 28426090-28426740  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ, CIRI-long
Parent gene Os07g0672500
Parent gene annotation Hypothetical conserved gene. (Os07t0672500-01);ATPase, AAA-type,
core domain containing protein. (Os07t0672500-02)
Parent gene strand +
Alternative splicing Os07g0672500_circ_g.1 Os07g0672500_circ_g.3 Os07g0672500_circ_g.4 Os07g0672500_circ_g.5 Os07g0672500_circ_g.6 Os07g0672500_circ_g.7 Os07g0672500_circ_g.8 Os07g0672500_circ_g.9 Os07g0672500_circ_g.10 Os07g0672500_circ_g.11 Os07g0672500_circ_g.12 Os07g0672500_circ_g.13 Os07g0672500_circ_g.14 Os07g0672500_circ_g.15
Support reads 9/232/16/32
Tissues leaf and panicle/root/root/shoot, root, seed, leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0672500-02:3
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: CGGCCACATGTGCTTTTCAG
R: ATCTCAAGAGCAGCACCCCT
F: GGAAAGATCAAGCACATCAACA
R: TGATCCAGGAAATGACTCTGTC
Sanger sequencing for FL    Yes
PCR primers for FL    F: TTGGTTGGAGGCGATGAAGT
R: CCAACCAATGTGACCTTAGC
Sequences
Splice junction sequence   CCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTA
ACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATGtctccttcagtacctatttatactactc
attttacggttggccatggtggaaattatgatttgaggctgacagagtcatttcctggatcact
tatttgca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 150
Transcript exons: 28426090-28426197,28426699-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCCTTTAACTTTGGAAATGGC
CGCCCTCCGTTGGTTCCTCATG

Transcript length: 177
Transcript exons: 28426090-28426206,28426681-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGCCAAGCTATCA
GTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 200
Transcript exons: 28426090-28426132,28426584-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCGAAAGATCAAGCACATCAACA
TTTTCGGCCACATGTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTAT
CATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGT
TCCTCATG

Transcript length: 205
Transcript exons: 28426090-28426174,28426621-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGA
TGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCG
TTGGTTCCTCATG

Transcript length: 211
Transcript exons: 28426090-28426170,28426611-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTGCCACATGTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTAC
ATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGC
CCTCCGTTGGTTCCTCATG

Transcript length: 218
Transcript exons: 28426090-28426196,28426630-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAAAGGGCAATATCCAGTTACCA
AAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAA
TGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 221
Transcript exons: 28426090-28426160,28426591-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACCAAGCACATCAACATTTTCGGCCACATGTGCTTTTCAGCAAGGGCAATATCCAGTTA
CCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGG
AAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 222
Transcript exons: 28426090-28426188,28426618-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCGTGCTTTTCAGCAAGGGCAATATCCAGTT
ACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTG
GAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 229
Transcript exons: 28426090-28426197,28426620-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGGCTTTTCAGCAAGGGCAATA
TCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTT
AACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 231
Transcript exons: 28426090-28426172,28426593-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCAGCACATCAACATTTTCGGCCACATGTGCTTTTCAGCAAGGGCAA
TATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCT
TTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 234
Transcript exons: 28426090-28426151,28426569-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTCA
GCAACTTCCAGAGGAAAGATCAAGCACATCAACATTTTCGGCCACATGTGCTTTTCAGCAAGGG
CAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGC
CCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 236
Transcript exons: 28426090-28426175,28426591-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGCAAGCACATCAACATTTTCGGCCACATGTGCTTTTCAGCAAG
GGCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAAT
GCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 236
Transcript exons: 28426090-28426206,28426622-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGTTTTCAGCAAG
GGCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAAT
GCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 239
Transcript exons: 28426090-28426206,28426619-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGTGCTTTTCAGC
AAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGT
AATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 240
Transcript exons: 28426090-28426197,28426609-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCGGCCACATGTGCTTTTCAG
CAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAG
TAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 247
Transcript exons: 28426090-28426206,28426611-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGGCCACATGTGC
TTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAG
CTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 248
Transcript exons: 28426090-28426206,28426610-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGGGCCACATGTG
CTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAA
GCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 251
Transcript exons: 28426090-28426175,28426576-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGTTCCAGAGGAAAGATCAAGCACATCAACATTTTCGGCCACAT
GTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGC
CAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 253
Transcript exons: 28426090-28426207,28426606-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGGTTTCGGCCAC
ATGTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGA
GCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 254
Transcript exons: 28426090-28426207,28426605-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGGTTTTCGGCCA
CATGTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGG
AGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 258
Transcript exons: 28426090-28426197,28426591-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCAAGCACATCAACATTTTCG
GCCACATGTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTA
AAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCA
TG

Transcript length: 259
Transcript exons: 28426090-28426207,28426600-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGGCAACATTTTC
GGCCACATGTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCT
AAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTC
ATG

Transcript length: 263
Transcript exons: 28426090-28426182,28426565-28426665,28426672-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTCAGCAACTTCCAGAGGAAAGATCAAGCACAT
CAACATTTTCGGCCACATGTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGA
TGCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTT
CCTCATG

Transcript length: 263
Transcript exons: 28426090-28426206,28426595-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGCACATCAACAT
TTTCGGCCACATGTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTATC
ATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTT
CCTCATG

Transcript length: 264
Transcript exons: 28426090-28426207,28426595-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGGCACATCAACA
TTTTCGGCCACATGTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGTAT
CATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGT
TCCTCATG

Transcript length: 266
Transcript exons: 28426090-28426207,28426593-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGGAGCACATCAA
CATTTTCGGCCACATGTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATGT
ATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTTG
GTTCCTCATG

Transcript length: 288
Transcript exons: 28426090-28426207,28426571-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGGGCAACTTCCA
GAGGAAAGATCAAGCACATCAACATTTTCGGCCACATGTGCTTTTCAGCAAGGGCAATATCCAG
TTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTT
TGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 294
Transcript exons: 28426090-28426207,28426565-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGGATTTCAGCAA
CTTCCAGAGGAAAGATCAAGCACATCAACATTTTCGGCCACATGTGCTTTTCAGCAAGGGCAAT
ATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTT
TAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 297
Transcript exons: 28426090-28426154,28426438-28426549,28426621-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GTGTATCCTTTCATCACCAACTACCCTTGCATAAGTGTTGCTTGTACTGGCATCTGTTCCACTA
ATGTAATTGATTGTTCAGAAAAGTATTAATGTTGTATATGAAGCTCCTTCTTTTCAGCAAGGGC
AATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCC
CTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 349
Transcript exons: 28426090-28426154,28426438-28426549,28426569-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GTGTATCCTTTCATCACCAACTACCCTTGCATAAGTGTTGCTTGTACTGGCATCTGTTCCACTA
ATGTAATTGATTGTTCAGAAAAGTATTAATGTTGTATATGAAGCTCCTTCAGCAACTTCCAGAG
GAAAGATCAAGCACATCAACATTTTCGGCCACATGTGCTTTTCAGCAAGGGCAATATCCAGTTA
CCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGG
AAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 350
Transcript exons: 28426090-28426207,28426438-28426549,28426621-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGGTGTATCCTTT
CATCACCAACTACCCTTGCATAAGTGTTGCTTGTACTGGCATCTGTTCCACTAATGTAATTGAT
TGTTCAGAAAAGTATTAATGTTGTATATGAAGCTCCTTCTTTTCAGCAAGGGCAATATCCAGTT
ACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTG
GAAATGGCCGCCCTCCGTTGGTTCCTCATG

Transcript length: 427
Transcript exons: 28426090-28426206,28426307-28426438,28426563-28426740
TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGAGGGGTGCTGC
TCTTGAGATTTACGTATCTAAAGCTGTCCATGTAAATGGGAAGGTATTAGATAAGACTGCTAAG
GTCACATTGGTTGGAGGCGATGAAGTTATTTTTAGTTCACTTGGGAGACATGCTTATATATTTC
AGCAACTTCCAGAGGAAAGATCAAGCACATCAACATTTTCGGCCACATGTGCTTTTCAGCAAGG
GCAATATCCAGTTACCAAAGGTACATTGGATGTATCATCTAAAGGAGCCAAGCTATCAGTAATG
CCCTTTAACTTTGGAAATGGCCGCCCTCCGTTGGTTCCTCATG

Genomic sequence TCTCCTTCAGTACCTATTTATACTACTCATTTTACGGTTGGCCATGGTGGAAATTATGATTTGA
GGCTGACAGAGTCATTTCCTGGATCACTTATTTGCAAATTGAAGCATGTTAAGGTATAGTTGCA
CATTCTTTTTTCTAAATTTTGACTTACGTGTTTTCATCTTGCCTTTTTTTTTTGAGTTTCTTAC
TCAATTTTTGACCTGTTTGTACCAGAGGGGTGCTGCTCTTGAGATTTACGTATCTAAAGCTGTC
CATGTAAATGGGAAGGTATTAGATAAGACTGCTAAGGTCACATTGGTTGGAGGCGATGAAGTTA
TTTTTAGTTCACTTGGGAGACATGCTTATGTATCCTTTCATCACCAACTACCCTTGCATAAGTG
TTGCTTGTACTGGCATCTGTTCCACTAATGTAATTGATTGTTCAGAAAAGTATTAATGTTGTAT
ATGAAGCTCCTTAACATGTTCGCAGATATTTCAGCAACTTCCAGAGGAAAGATCAAGCACATCA
ACATTTTCGGCCACATGTGCTTTTCAGCAAGGGCAATATCCAGTTACCAAAGGTACATTGGATG
TATCATCTAAAGGAGCCAAGCTATCAGTAATGCCCTTTAACTTTGGAAATGGCCGCCCTCCGTT
GGTTCCTCATG
Conservation Information
Conserved circRNAs NA
PMCS 0.505290028
Functional Information
Coding potential Y
Potential coding position 28426696-28426145(+)
28426715-28426145(+)
Potential amino acid sequence MPFNFGNGRPPLVPHVSFSTYLYYSFYGWPWWKL*(+)
MAALRWFLMSPSVPIYTTHFTVGHGGNYDLRLTESFPGSLICKLKHVKRGAALEIYVSKAVHVN
GKVLDKTAKVTLVGGDEVIFSSLGRHAYIFQQLPEERSSTSTFSATCAFQQGQYPVTKGTLDVS
SKGAKLSVMPFNFGNGRPPLVPHVSFSTYLYYSFYGWPWWKL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA