Plant Circular RNA Database

Detail information of Os09g0346400_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os09g0346400_circ_g.5
					
						ID in PlantcircBase
						osa_circ_038901
					
						Alias
						Os09circ03064/Os_ciR700
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr9: 10839626-10840970  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, PcircRNA_finder, SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os09g0346400						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os09t0346400-01);Hypothetical c
onserved gene. (Os09t0346400-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os09g0346400_circ_g.4 Os09g0346400_circ_g.6 Os09g0346400_circ_g.7 Os09g0346400_circ_g.8 Os09g0346400_circ_g.9 						
					
						Support reads
						6/37/18
					
						Tissues
						leaf and panicle/root/shoot, root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os09t0346400-01:4
Os09t0346400-02:1

General Information
CircRNA Name	Os09g0346400_circ_g.5
ID in PlantcircBase	osa_circ_038901
Alias	Os09circ03064/Os_ciR700
Organism	Oryza sativa
Position	chr9: 10839626-10840970 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, KNIFE, PcircRNA_finder, SMALT, Segemehl, find_circ
Parent gene	Os09g0346400
Parent gene annotation	Conserved hypothetical protein. (Os09t0346400-01);Hypothetical c onserved gene. (Os09t0346400-02)
Parent gene strand	+
Alternative splicing	Os09g0346400_circ_g.4 Os09g0346400_circ_g.6 Os09g0346400_circ_g.7 Os09g0346400_circ_g.8 Os09g0346400_circ_g.9
Support reads	6/37/18
Tissues	leaf and panicle/root/shoot, root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os09t0346400-01:4 Os09t0346400-02:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGAGATGGGTTCGCTTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATGAA
TCATTGGTCCAATTGAGACATGCACGAGATGCCTATggacatgggaatggaggttgttggaact
gaggctgcaccagcagaggttaaagtaactgatggagaagtgaaccttttccaagagaatgaaa
gtaaagca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 154
Transcript exons: 10839626-10839667,10840859-10840970
GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCGGCTATTGACATGGAGATGGGT
TCGCTTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCC
AATTGAGACATGCACGAGATGCCTAT
Transcript length: 191
Transcript exons: 10839626-10839764,10840919-10840970
GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA
GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC
TTTTTGGTTCAGGACAAGGCACATGAATCATTGGTCCAATTGAGACATGCACGAGATGCCTAT
Transcript length: 198
Transcript exons: 10839626-10839758,10840906-10840970
GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA
GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC
TTTTTCCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCCAATTGAGACATGCACGAGAT
GCCTAT
Transcript length: 205
Transcript exons: 10839626-10839743,10840884-10840970
GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA
GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGCTTCAAGAAG
ATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCCAATTGAGACATGC
ACGAGATGCCTAT
Transcript length: 219
Transcript exons: 10839626-10839788,10840915-10840970
GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA
GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC
TTTTTGGTTCAGATAACAGCACAGCTACAGCAAATGAAAGGACAAGGCACATGAATCATTGGTC
CAATTGAGACATGCACGAGATGCCTAT
Transcript length: 279
Transcript exons: 10839626-10839731,10840798-10840970
GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA
GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCGAGTAAAGAAGGAGCGACAAGC
AGTCAGGTCTAAAATTAAGGTCCTGGAGGATGAGCTAAAGGCTATTGACATGGAGATGGGTTCG
CTTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCCAAT
TGAGACATGCACGAGATGCCTAT
Transcript length: 281
Transcript exons: 10839626-10839788,10840853-10840970
GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA
GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC
TTTTTGGTTCAGATAACAGCACAGCTACAGCAAATGCTAAAGGCTATTGACATGGAGATGGGTT
CGCTTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCCA
ATTGAGACATGCACGAGATGCCTAT
Transcript length: 294
Transcript exons: 10839626-10839842,10840894-10840970
GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA
GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC
TTTTTGGTTCAGATAACAGCACAGCTACAGCAAATGGAGCCGCAAATGGCGCTGATTTGGCACC
CCCAAAGGATGCAGAGGAGGACTGGATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATG
AATCATTGGTCCAATTGAGACATGCACGAGATGCCTAT
Transcript length: 303
Transcript exons: 10839626-10839742,10840782-10840882,10840886-10840970
GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA
GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGGGAGGGCAT
TGATGGAGTAAAGAAGGAGCGACAAGCAGTCAGGTCTAAAATTAAGGTCCTGGAGGATGAGCTA
AAGGCTATTGACATGGAGATGGGTTCTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACA
AGGCACATGAATCATTGGTCCAATTGAGACATGCACGAGATGCCTAT
Transcript length: 325
Transcript exons: 10839626-10839712,10839716-10839816,10840790-10840890,10
840935-10840970
GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA
GAAGTGAACCTTTTCCAAGAGAAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTCTTT
TTGGTTCAGATAACAGCACAGCTACAGCAAATGGAGCCGCAAATGGCGCTGATTTGGCACCATT
GATGGAGTAAAGAAGGAGCGACAAGCAGTCAGGTCTAAAATTAAGGTCCTGGAGGATGAGCTAA
AGGCTATTGACATGGAGATGGGTTCGCTTCAAGTCATTGGTCCAATTGAGACATGCACGAGATG
CCTAT
Transcript length: 940
Transcript exons: 10839626-10839995,10840204-10840398,10840498-10840677,10
840776-10840970
GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA
GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC
TTTTTGGTTCAGATAACAGCACAGCTACAGCAAATGGAGCCGCAAATGGCGCTGATTTGGCACC
CCCAAAGGATGCAGAGGAGGACTGGCCTGAAGCTAGGAAAACACATAGCTTCTTCTTTGTCAAG
ATCCGCTTACTTGAGGACCCTAAGCTGAAAATGAAGATTGATCAGGCAGAAAAGGACTTCCAGA
AGAAGATTCAAGCTCGTTCTCAAATTTTTGAGGCTATAAAAGCCAAGAAGAATGAGCGCTTCGG
TATTATCTCAGAGCTGAAGCCATTGGCTGCTGAGAACAAGCAATACAACGAAGCCGTAAGTGAG
AAGTTGAAGGCGATAGAACCTCTTAGAAACCGTTTAGGAAAGTTCCGCGATGAAAACAATGCTA
TCCGGGCACAGGGTGCAGGCATATGTTCTTCAATTGAAGAGCTTGAGAAATCGATCAAGAGATT
GAACGACCGCATATCTCATGAGAGCATACCCTTGGATGAGGAGAAGCGGTTGATCAAACAGATT
AGAGAGCTTGAAAAGACCAGACCGAAAGTCATCTCCACTTCTGCTAACCGAGCTCAAATCCAAG
ATACAGTGGTCGAAAGAGACGCCATACAGGATCAGGTTAAAATCATCGGGGAGGGCATTGATGG
AGTAAAGAAGGAGCGACAAGCAGTCAGGTCTAAAATTAAGGTCCTGGAGGATGAGCTAAAGGCT
ATTGACATGGAGATGGGTTCGCTTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACAAGG
CACATGAATCATTGGTCCAATTGAGACATGCACGAGATGCCTAT
						
					

						Genomic sequence
						
							GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA
GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC
TTTTTGGTTCAGATAACAGCACAGCTACAGCAAATGGAGCCGCAAATGGCGCTGATTTGGCACC
CCCAAAGGATGCAGAGGAGGACTGGCCTGAAGCTAGGAAAACACATAGCTTCTTCTTTGTCAAG
ATCCGCTTACTTGAGGACCCTAAGCTGAAAATGAAGATTGATCAGGCAGAAAAGGACTTCCAGA
AGAAGATTCAAGCTCGTTCTCAAATTTTTGAGGCTATAAAAGCCAAGAAGGTATGGTCCTAGTT
CTTACAGTTCTAGTACATATAAATATGGTCAATCTTGTTTAAATTTTATCCTAAATCAGCAAGA
AGTTATATTCCTTACAACTTGTTTAAAACGACTGTCATCTGCTATTGATGCTAGAGCCTAGAAT
ATGTTGCCAATTTGAGCAGACTACGAAATTTTGGTGATATGTCTGATTTTGGAACTTAATCTGC
AGAATGAGCGCTTCGGTATTATCTCAGAGCTGAAGCCATTGGCTGCTGAGAACAAGCAATACAA
CGAAGCCGTAAGTGAGAAGTTGAAGGCGATAGAACCTCTTAGAAACCGTTTAGGAAAGTTCCGC
GATGAAAACAATGCTATCCGGGCACAGGGTGCAGGCATATGTTCTTCAATTGAAGAGCTTGAGA
AATCGGTATGGCAGTACGGTTAACCTATGATAATTTATTTTTCTGTTCTTCAGTCCAATATTTG
ATTACATGTTTGTGCCTTCTCCATTGCTTTGTCCTATTAGATCAAGAGATTGAACGACCGCATA
TCTCATGAGAGCATACCCTTGGATGAGGAGAAGCGGTTGATCAAACAGATTAGAGAGCTTGAAA
AGACCAGACCGAAAGTCATCTCCACTTCTGCTAACCGAGCTCAAATCCAAGATACAGTGGTCGA
AAGAGACGCCATACAGGATCAGGTTAAAGTAAGTATATACAACTAAATATTTGTTTGTGCATTT
ATCTTCTTGAAAAAAAAATAGAATTAATAATGGCCAAACATTGTTTGCAACTGTTACTTCAGAT
CATCGGGGAGGGCATTGATGGAGTAAAGAAGGAGCGACAAGCAGTCAGGTCTAAAATTAAGGTC
CTGGAGGATGAGCTAAAGGCTATTGACATGGAGATGGGTTCGCTTCAAGAAGATTTAACTGCTG
CCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCCAATTGAGACATGCACGAGATGCCTA
T
						
					

			
		

Sequences
Splice junction sequence	GGAGATGGGTTCGCTTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATGAA TCATTGGTCCAATTGAGACATGCACGAGATGCCTATggacatgggaatggaggttgttggaact gaggctgcaccagcagaggttaaagtaactgatggagaagtgaaccttttccaagagaatgaaa gtaaagca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 154 Transcript exons: 10839626-10839667,10840859-10840970 GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCGGCTATTGACATGGAGATGGGT TCGCTTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCC AATTGAGACATGCACGAGATGCCTAT Transcript length: 191 Transcript exons: 10839626-10839764,10840919-10840970 GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC TTTTTGGTTCAGGACAAGGCACATGAATCATTGGTCCAATTGAGACATGCACGAGATGCCTAT Transcript length: 198 Transcript exons: 10839626-10839758,10840906-10840970 GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC TTTTTCCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCCAATTGAGACATGCACGAGAT GCCTAT Transcript length: 205 Transcript exons: 10839626-10839743,10840884-10840970 GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGCTTCAAGAAG ATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCCAATTGAGACATGC ACGAGATGCCTAT Transcript length: 219 Transcript exons: 10839626-10839788,10840915-10840970 GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC TTTTTGGTTCAGATAACAGCACAGCTACAGCAAATGAAAGGACAAGGCACATGAATCATTGGTC CAATTGAGACATGCACGAGATGCCTAT Transcript length: 279 Transcript exons: 10839626-10839731,10840798-10840970 GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCGAGTAAAGAAGGAGCGACAAGC AGTCAGGTCTAAAATTAAGGTCCTGGAGGATGAGCTAAAGGCTATTGACATGGAGATGGGTTCG CTTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCCAAT TGAGACATGCACGAGATGCCTAT Transcript length: 281 Transcript exons: 10839626-10839788,10840853-10840970 GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC TTTTTGGTTCAGATAACAGCACAGCTACAGCAAATGCTAAAGGCTATTGACATGGAGATGGGTT CGCTTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCCA ATTGAGACATGCACGAGATGCCTAT Transcript length: 294 Transcript exons: 10839626-10839842,10840894-10840970 GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC TTTTTGGTTCAGATAACAGCACAGCTACAGCAAATGGAGCCGCAAATGGCGCTGATTTGGCACC CCCAAAGGATGCAGAGGAGGACTGGATTTAACTGCTGCCAATGCCAGAAAGGACAAGGCACATG AATCATTGGTCCAATTGAGACATGCACGAGATGCCTAT Transcript length: 303 Transcript exons: 10839626-10839742,10840782-10840882,10840886-10840970 GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGGGAGGGCAT TGATGGAGTAAAGAAGGAGCGACAAGCAGTCAGGTCTAAAATTAAGGTCCTGGAGGATGAGCTA AAGGCTATTGACATGGAGATGGGTTCTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACA AGGCACATGAATCATTGGTCCAATTGAGACATGCACGAGATGCCTAT Transcript length: 325 Transcript exons: 10839626-10839712,10839716-10839816,10840790-10840890,10 840935-10840970 GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA GAAGTGAACCTTTTCCAAGAGAAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTCTTT TTGGTTCAGATAACAGCACAGCTACAGCAAATGGAGCCGCAAATGGCGCTGATTTGGCACCATT GATGGAGTAAAGAAGGAGCGACAAGCAGTCAGGTCTAAAATTAAGGTCCTGGAGGATGAGCTAA AGGCTATTGACATGGAGATGGGTTCGCTTCAAGTCATTGGTCCAATTGAGACATGCACGAGATG CCTAT Transcript length: 940 Transcript exons: 10839626-10839995,10840204-10840398,10840498-10840677,10 840776-10840970 GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC TTTTTGGTTCAGATAACAGCACAGCTACAGCAAATGGAGCCGCAAATGGCGCTGATTTGGCACC CCCAAAGGATGCAGAGGAGGACTGGCCTGAAGCTAGGAAAACACATAGCTTCTTCTTTGTCAAG ATCCGCTTACTTGAGGACCCTAAGCTGAAAATGAAGATTGATCAGGCAGAAAAGGACTTCCAGA AGAAGATTCAAGCTCGTTCTCAAATTTTTGAGGCTATAAAAGCCAAGAAGAATGAGCGCTTCGG TATTATCTCAGAGCTGAAGCCATTGGCTGCTGAGAACAAGCAATACAACGAAGCCGTAAGTGAG AAGTTGAAGGCGATAGAACCTCTTAGAAACCGTTTAGGAAAGTTCCGCGATGAAAACAATGCTA TCCGGGCACAGGGTGCAGGCATATGTTCTTCAATTGAAGAGCTTGAGAAATCGATCAAGAGATT GAACGACCGCATATCTCATGAGAGCATACCCTTGGATGAGGAGAAGCGGTTGATCAAACAGATT AGAGAGCTTGAAAAGACCAGACCGAAAGTCATCTCCACTTCTGCTAACCGAGCTCAAATCCAAG ATACAGTGGTCGAAAGAGACGCCATACAGGATCAGGTTAAAATCATCGGGGAGGGCATTGATGG AGTAAAGAAGGAGCGACAAGCAGTCAGGTCTAAAATTAAGGTCCTGGAGGATGAGCTAAAGGCT ATTGACATGGAGATGGGTTCGCTTCAAGAAGATTTAACTGCTGCCAATGCCAGAAAGGACAAGG CACATGAATCATTGGTCCAATTGAGACATGCACGAGATGCCTAT
Genomic sequence	GGACATGGGAATGGAGGTTGTTGGAACTGAGGCTGCACCAGCAGAGGTTAAAGTAACTGATGGA GAAGTGAACCTTTTCCAAGAGAATGAAAGTAAAGCAACTGCCAAGGAACGTGAGGAGGCGGTTC TTTTTGGTTCAGATAACAGCACAGCTACAGCAAATGGAGCCGCAAATGGCGCTGATTTGGCACC CCCAAAGGATGCAGAGGAGGACTGGCCTGAAGCTAGGAAAACACATAGCTTCTTCTTTGTCAAG ATCCGCTTACTTGAGGACCCTAAGCTGAAAATGAAGATTGATCAGGCAGAAAAGGACTTCCAGA AGAAGATTCAAGCTCGTTCTCAAATTTTTGAGGCTATAAAAGCCAAGAAGGTATGGTCCTAGTT CTTACAGTTCTAGTACATATAAATATGGTCAATCTTGTTTAAATTTTATCCTAAATCAGCAAGA AGTTATATTCCTTACAACTTGTTTAAAACGACTGTCATCTGCTATTGATGCTAGAGCCTAGAAT ATGTTGCCAATTTGAGCAGACTACGAAATTTTGGTGATATGTCTGATTTTGGAACTTAATCTGC AGAATGAGCGCTTCGGTATTATCTCAGAGCTGAAGCCATTGGCTGCTGAGAACAAGCAATACAA CGAAGCCGTAAGTGAGAAGTTGAAGGCGATAGAACCTCTTAGAAACCGTTTAGGAAAGTTCCGC GATGAAAACAATGCTATCCGGGCACAGGGTGCAGGCATATGTTCTTCAATTGAAGAGCTTGAGA AATCGGTATGGCAGTACGGTTAACCTATGATAATTTATTTTTCTGTTCTTCAGTCCAATATTTG ATTACATGTTTGTGCCTTCTCCATTGCTTTGTCCTATTAGATCAAGAGATTGAACGACCGCATA TCTCATGAGAGCATACCCTTGGATGAGGAGAAGCGGTTGATCAAACAGATTAGAGAGCTTGAAA AGACCAGACCGAAAGTCATCTCCACTTCTGCTAACCGAGCTCAAATCCAAGATACAGTGGTCGA AAGAGACGCCATACAGGATCAGGTTAAAGTAAGTATATACAACTAAATATTTGTTTGTGCATTT ATCTTCTTGAAAAAAAAATAGAATTAATAATGGCCAAACATTGTTTGCAACTGTTACTTCAGAT CATCGGGGAGGGCATTGATGGAGTAAAGAAGGAGCGACAAGCAGTCAGGTCTAAAATTAAGGTC CTGGAGGATGAGCTAAAGGCTATTGACATGGAGATGGGTTCGCTTCAAGAAGATTTAACTGCTG CCAATGCCAGAAAGGACAAGGCACATGAATCATTGGTCCAATTGAGACATGCACGAGATGCCTA T

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_008013* osi_circ_018925 						
					
						PMCS
						0.564217098

Conservation Information
Conserved circRNAs	osi_circ_008013* osi_circ_018925
PMCS	0.564217098

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							10839631-10839652(+)
10840955-10839652(+)
						
						Potential amino acid sequence
						
							MGMEVVGTEAAPAEVKVTDGEVNLFQENESKATAKEREEAVLFGSDNSTATANGAANGADLAPP
KDAEEDWPEARKTHSFFFVKIRLLEDPKLKMKIDQAEKDFQKKIQARSQIFEAIKAKKNERFGI
ISELKPLAAENKQYNEAVSEKLKAIEPLRNRLGKFRDENNAIRAQGAGICSSIEELEKSIKRLN
DRISHESIPLDEEKRLIKQIRELEKTRPKVISTSANRAQIQDTVVERDAIQDQVKIIGEGIDGV
KKERQAVRSKIKVLEDELKAIDMEMGSLQEDLTAANARKDKAHESLVQLRHARDAYGHGNGGCW
N*(+)
MHEMPMDMGMEVVGTEAAPAEVKVTDGEVNLFQENESKATAKEREEAVLFGSDNSTATANGAAN
GADLAPPKDAEEDWPEARKTHSFFFVKIRLLEDPKLKMKIDQAEKDFQKKIQARSQIFEAIKAK
KNERFGIISELKPLAAENKQYNEAVSEKLKAIEPLRNRLGKFRDENNAIRAQGAGICSSIEELE
KSIKRLNDRISHESIPLDEEKRLIKQIRELEKTRPKVISTSANRAQIQDTVVERDAIQDQVKII
GEGIDGVKKERQAVRSKIKVLEDELKAIDMEMGSLQEDLTAANARKDKAHESLVQLRHARDAYG
HGNGGCWN*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	10839631-10839652(+) 10840955-10839652(+)
Potential amino acid sequence	MGMEVVGTEAAPAEVKVTDGEVNLFQENESKATAKEREEAVLFGSDNSTATANGAANGADLAPP KDAEEDWPEARKTHSFFFVKIRLLEDPKLKMKIDQAEKDFQKKIQARSQIFEAIKAKKNERFGI ISELKPLAAENKQYNEAVSEKLKAIEPLRNRLGKFRDENNAIRAQGAGICSSIEELEKSIKRLN DRISHESIPLDEEKRLIKQIRELEKTRPKVISTSANRAQIQDTVVERDAIQDQVKIIGEGIDGV KKERQAVRSKIKVLEDELKAIDMEMGSLQEDLTAANARKDKAHESLVQLRHARDAYGHGNGGCW N(+) MHEMPMDMGMEVVGTEAAPAEVKVTDGEVNLFQENESKATAKEREEAVLFGSDNSTATANGAAN GADLAPPKDAEEDWPEARKTHSFFFVKIRLLEDPKLKMKIDQAEKDFQKKIQARSQIFEAIKAK KNERFGIISELKPLAAENKQYNEAVSEKLKAIEPLRNRLGKFRDENNAIRAQGAGICSSIEELE KSIKRLNDRISHESIPLDEEKRLIKQIRELEKTRPKVISTSANRAQIQDTVVERDAIQDQVKII GEGIDGVKKERQAVRSKIKVLEDELKAIDMEMGSLQEDLTAANARKDKAHESLVQLRHARDAYG HGNGGCWN(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os09g0346400_circ_g.5

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