Detail information of Zm00001d014255_circ_g.3


General Information
CircRNA Name Zm00001d014255_circ_g.3
ID in PlantcircBase zma_circ_001944
Alias circ45
Organism Zea mays
Position chr5: 38337499-38338529  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method KNIFE
Parent gene Zm00001d014255
Parent gene annotation Transcription factor TFIIE alpha subunit
Parent gene strand +
Alternative splicing Zm00001d014255_circ_g.1 Zm00001d014255_circ_g.2
Support reads NA
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d014255_T015:3
Zm00001d014255_T001:3
Zm00001d014255_T003:3
Zm00001d014255_T006:3
Zm00001d014255_T004:3
Zm00001d014255_T012:3
Zm00001d014255_T002:3
Zm00001d014255_T017:2
Zm00001d014255_T013:3
Zm00001d014255_T010:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTGATTCTCAAACTGAACGCCAAGTGGGCAAGAAATACAAGCGGGACGACGATGATGATGAAG
ACATTGAATGGGAAGAGCATCAACCTACAGCTGCAGggagcaattgaagccattggttgcacaa
cttgatagagtgaagaatctgcctgcgcctgagtttggtagtcttcaaacatgggaaagagcac
atattggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGCAATTGAAGCCATTGGTTGCACAACTTGATAGAGTGAAGAATCTGCCTGCGCCTGAGTTT
GGTAGTCTTCAAACATGGGAAAGAGCACATATTGGTGCCTTTGCAATTGGTGACCCTGCTGCAG
CTGATTCTTCTAGGAATTCACAAGGGCAGTATGGTACACCAATGCCATACCTTGGACAGACAAA
GGTAAGACTTCCATATATCTTCTTGGTTGTATATCTGACATAATTAAGTTAGATTTCAACTCTT
CTCCATATCCCAATGAATTTCTGAATCATTAGTCTATCATCTGCACAGAAGTCAACTCTTCTCT
TCTCTACTATCCATCAAAATAAGAAAAACACCTTGAATTGAACCAGAAGTTTTCACATGTGTAC
CTTTTGTTAAATGATGTTGCGGCATCTCTATAAAAAAAGTTCTCACCAATGCATTTATGTGTTT
AATATGGAGTCACCACACATGTGCTTAGCTTGTTGCACTTTACATTGCGGGCATACCTTTGCCT
GTACAGTGAGATGTCTGTTCCATTCTTCAGGTTGAAGTTGATATATTGAGTGATGGTGAAAAAG
AAGGTGCTGAATCAGGTAAAGATGGTTCTGAACTCAAAGTCATACCTCCATGGATGATCAAAGA
TGGCATGAATCTTACAAAGGAACAAAGAGGAGAGAAAATTGAGTCACAAAAACTTGAAAAATCT
GAAGCCAAAGATGATAAGAAACAGGACTTGAAAGATGATCAAAGTGTACAGGTCAGTTCAGTAA
TGAACATATACTGGACTTTATAGTAAAGAATCTACTGTTCAGATAATTTTATATTTTTATCCTG
TAGGAAGAATACATAAAGGCCTATTATGAGGCCTTGAGGAAAAAGCAGGAAGAGGAAGAAGCAA
AAAACAGAATGCAGCAGGAAGGCAAGATTTCTGTCCCTGATTCTCAAACTGAACGCCAAGTGGG
CAAGAAATACAAGCGGGACGACGATGATGATGAAGACATTGAATGGGAAGAGCATCAACCTACA
GCTGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.065551075
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b