Detail information of Zm00001d014255_circ_g.1


General Information
CircRNA Name Zm00001d014255_circ_g.1
ID in PlantcircBase zma_circ_001943
Alias circ44
Organism Zea mays
Position chr5: 38324116-38338529  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method KNIFE
Parent gene Zm00001d014255
Parent gene annotation Transcription factor TFIIE alpha subunit
Parent gene strand +
Alternative splicing Zm00001d014255_circ_g.2 Zm00001d014255_circ_g.3
Support reads NA
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d014255_T013:5
Zm00001d014255_T004:5
Zm00001d014255_T008:2
Zm00001d014255_T010:5
Zm00001d014255_T006:5
Zm00001d014255_T015:5
Zm00001d014255_T002:5
Zm00001d014255_T003:5
Zm00001d014255_T012:5
Zm00001d014255_T007:1
Zm00001d014255_T017:4
Zm00001d014255_T001:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTGATTCTCAAACTGAACGCCAAGTGGGCAAGAAATACAAGCGGGACGACGATGATGATGAAG
ACATTGAATGGGAAGAGCATCAACCTACAGCTGCAGgatatgtgatgttgtcaggtatcggatt
caccgcatgaaaaaaaaattgaaggatgaattggacagcagaaatacaattcaacactatatat
gtcctagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.007891626
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b