Detail information of Os11g0157600_circ_g.2


General Information
CircRNA Name Os11g0157600_circ_g.2
ID in PlantcircBase osa_circ_008519
Alias NA
Organism Oryza sativa
Position chr11: 2791062-2793220  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0157600
Parent gene annotation Similar to CCT motif family protein, expressed. (Os11t0157600-01
)
Parent gene strand +
Alternative splicing Os11g0157600_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0157600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACTGCAGTAATAATGTATTGGATGGTGACCGGTCTCGCCGTGAAGCTGCCTTGTTGAAATTC
CGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAGatgaatagccaaacaaatgcatcggaaa
acaatgcggctagcaatcatttaagtgccaatggtggtaatgggtcaaagacaggagaacacag
cgatgagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGAATAGCCAAACAAATGCATCGGAAAACAATGCGGCTAGCAATCATTTAAGTGCCAATGGTG
GTAATGGGTCAAAGACAGGAGAACACAGCGATGAGGAAAGTGATGCTCAGGTGAGCATGTGTGC
TAGTTTATACCTAGTCTGTCTTATGTTGTCAGCACACGTCAAAATTCTTCATTCCTAAGTTCAT
TGAAGCCAAACAGAAAAAAGAAGTTTGAAAGCTGTGAACTGCTAAAGTTATTTGATTAAGCTCG
ATTTTCTATCATTTTTTTATCAGGACTTTATCCTGTAAATTTGACCAGTATTGTTTACTAAAGC
AAGTTAGAGTTCATCATAACTGATCTTCTATGAAGTTCTGATGTCTATTTTAAATTCATTATTG
GAATTCTTCTGCACCTAACATAATGGTGGCTCTTTTACCTTGATCAGAGTTCTGGTAGCAAAAG
GGAGGTTGAAATTCAAAGTGCTGAAAAGTTACCAGAGGTTGTTGCAGATGGTGGGGCAGGCTCA
TCCAGAGAACATAAAATACAGAATGGTTTCATTGATGGAATGAACACAAAATCACATGCATTAA
AGGGTAATGATGGTAAGGAATTTAGACATGGTTATCTGATCTTTGATTTTCATGTGCCTCTATT
GGCTATTGAGTGTCAACTTTGCATATGAGGACATGTGATAGTTATTGCTATTTAACCTTTTGTA
GATGCTCCAAGTGGAAACGCGTGTGGTGATAGTGAACTACAAGTGCTTTCAACTGAGAAGAATG
TGCGTTCCAAATTCCTTAATGGTATTACTTCTGCGAAGGTTGCTGGACAGATAATGGATAATGC
CTTGAGGTTTGCTGATTCAAGTTCACTTCGTTCAAGTGATCCTGGAAAAGATCTTTTGGTTGTT
GCCCAGACCACAGCTGACAGAAAATGCAAATCTTCAGCACTGGAAAATAATGCTGTCATGGAAA
ATAACCTTAGTGAAAATTCAAAGGGGACTGCAACAGGCCATGCTGAATCTTGTCCGTCTCACTT
TGTGGAGATAAATTTAGAAAAGCAACATCATCTCAATGGTTATACAAACCACAAGTTGAATGAG
AAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAGGTACTAGTTTTTAAAGTTTGAAA
TTTCATCCAAATAAATTCTGGTTTAAATAATGTTGGTTTCTGAGTGGGGTTTGTTTTGCATGCC
CATTTGTTTCTTTATGCTGTTATACTATTTTGCTAGTTCTAGTCCATTCCCTCTTGGGGTAGAT
ATAAGTAATTGCTTGCGTGCATATGATTTTATAACTCTTGCTAGCTTTATTTGCTTGTTCATCA
CATGGTTGGCAACCTGTCACAGGTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATT
TCCCCCTTCCTTCCGCGTGGTTCACCAACAACCTGTTTACGACAAGAATCCCCAATCCAGCCGG
GTCTTGCTTTCCTGTGAACATAATACACGCGAGAGTACAGTGCAAGCTCAGGTCCCTTTGGACA
GAAGCACAGAGGGTGCTGCAATCCTGTGTTCCAGTAGTGTAAGAGAAGATGCTGGTACAAGCAG
TTCCTCTCCTAGAAAGGACAGTTTAACTCATCCTTCTTATGGGTTTATACCTGTTCCAATTCCT
GTTGGTGCTGCTATACCCTACCACTACGGTGCAATTATGCAGCCAATGTATTATCCACAGGGTG
CTTTTATGCATTGTGATTCAGCTGCCATCAACAAGACAGCAATTCAGCATGTCTCTTGTCAATC
TAACTACCATGAAAATCTTGGTAAACCGCCACAGATTGATGAGCACAAGCAGCCAGAAGAAAAC
CATCAGTTGCATCATTCAAGACAAATTCTCCGAGAATCAGGAGAACCAGTTGACTTGGCGAAGG
CTCATATGGAGCGTATTAACCAGAGTGCTAGCTGTAGCCAGGATATTCGCAAAGGAAGTGGATG
CACTGGGAGCGGTGAAACTGATGCAAATACAAATACGGTAATTGCACTAGAAAGTGGCAATGAG
AGCGGTGTCCAGAACTGCAGTAATAATGTATTGGATGGTGACCGGTCTCGCCGTGAAGCTGCCT
TGTTGAAATTCCGGATGAAAAGAAAAGATAGATGTTTCGAGAAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.150349035
Functional Information
Coding potential Y
Potential coding position 2791063-2793217(+)
2791111-2793094(-)
2791085-2793011(-)
Potential amino acid sequence MNSQTNASENNAASNHLSANGGNGSKTGEHSDEESDAQSSGSKREVEIQSAEKLPEVVADGGAG
SSREHKIQNGFIDGMNTKSHALKGNDDAPSGNACGDSELQVLSTEKNVRSKFLNGITSAKVAGQ
IMDNALRFADSSSLRSSDPGKDLLVVAQTTADRKCKSSALENNAVMENNLSENSKGTATGHAES
CPSHFVEINLEKQHHLNGYTNHKLNEKDIFNHSNSSAFSRYGNKRIESSAQRPFPPSFRVVHQQ
PVYDKNPQSSRVLLSCEHNTRESTVQAQVPLDRSTEGAAILCSSSVREDAGTSSSSPRKDSLTH
PSYGFIPVPIPVGAAIPYHYGAIMQPMYYPQGAFMHCDSAAINKTAIQHVSCQSNYHENLGKPP
QIDEHKQPEENHQLHHSRQILRESGEPVDLAKAHMERINQSASCSQDIRKGSGCTGSGETDANT
NTVIALESGNESGVQNCSNNVLDGDRSRREAALLKFRMKRKDRCFEKKMNSQTNASENNAASNH
LSANGGNGSKTGEHSDEESDAQSSGSKREVEIQSAEKLPEVVADGGAGSSREHKIQNGFIDGMN
TKSHALKGNDDAPSGNACGDSELQVLSTEKNVRSKFLNGITSAKVAGQIMDNALRFADSSSLRS
SDPGKDLLVVAQTTADRKCKSSALENNAVMENNLSENSKGTATGHAESCPSHFVEINLEKQHHL
NGYTNHKLNEKDIFNHSNSSAFSRYGNKRIESSAQRPFPPSFRVVHQQPVYDKNPQSSRVLLSC
EHNTRESTVQAQVPLDRSTEGAAILCSSSVREDAGTSSSSPRKDSLTHPSYGFIPVPIPVGAAI
PYHYGAIMQPMYYPQGAFMHCDSAAINKTAIQHVSCQSNYHENLGKPPQIDEHKQPEENHQLHH
SRQILRESGEPVDLAKAHMERINQSASCSQDIRKGSGCTGSGETDANTNTVIALESGNESGVQN
CSNNVLDGDRSRREAALLKFRMKRKDRCFEKKMNSQTNASENNAASNHLSANGGNGSKTGEHSD
EESDAQSSGSKREVEIQSAEKLPEVVADGGAGSSREHKIQNGFIDGMNTKSHALKGNDDAPSGN
ACGDSELQVLSTEKNVRSKFLNGITSAKVAGQIMDNALRFADSSSLRSSDPGKDLLVVAQTTAD
RKCKSSALENNAVMENNLSENSKGTATGHAESCPSHFVEINLEKQHHLNGYTNHKLNEKDIFNH
SNSSAFSRYGNKRIESSAQRPFPPSFRVVHQQPVYDKNPQSSRVLLSCEHNTRESTVQAQVPLD
RSTEGAAILCSSSVREDAGTSSSSPRKDSLTHPSYGFIPVPIPVGAAIPYHYGAIMQPMYYPQG
AFMHCDSAAINKTAIQHVSCQSNYHENLGKPPQIDEHKQPEENHQLHHSRQILRESGEPVDLAK
AHMERINQSASCSQDIRKGSGCTGSGETDANTNTVIALESGNESGVQNCSNNVLDGDRSRREAA
LLKFRMKRKDRCFEKKMNSQTNASENNAASNHLSANGGNGSKTGEHSDEESDAQSSGSKREVEI
QSAEKLPEVVADGGAGSSREHKIQNGFIDGMNTKSHALKGNDDAPSGNACGDSELQVLSTEKNV
RSKFLNGITSAKVAGQIMDNALRFADSSSLRSSDPGKDLLVVAQTTADRKCKSSALENNAVMEN
NLSENSKGTATGHAESCPSHFVEINLEKQHHLNGYTNHKLNEKDIFNHSNSSAFSRYGNKRIES
SAQRPFPPSFRVVHQQPVYDKNPQSSRVLLSCEHNTRESTVQAQVPLDRSTEGAAILCSSSVRE
DAGTSSSSPRKDSLTHPSYGFIPVPIPVGAAIPYHYGAIMQPMYYPQGAFMHCDSAAINKTAIQ
HVSCQSNYHENLGKPPQIDEHKQPEENHQLHHSRQILRESGEPVDLAKAHMERINQSASCSQDI
RKGSGCTGSGETDANTNTVIALESGNESGVQNCSNNVLDGDRSRREAALLKFRMKRKDRCFEKK
(+)
MIASRIVFRCICLAIHLFLETSIFSFHPEFQQGSFTARPVTIQYIITAVLDTALIATF*(-)
MHLFGYSSFSRNIYLFFSSGISTRQLHGETGHHPIHYYCSSGHRSHCHFLVQLPYLYLHQFHRS
QCIHFLCEYPGYS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017