Detail information of Os04g0584600_circ_g.3


General Information
CircRNA Name Os04g0584600_circ_g.3
ID in PlantcircBase osa_circ_024999
Alias NA
Organism Oryza sativa
Position chr4: 29532865-29533510  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0584600
Parent gene annotation Similar to Calcium dependent protein kinase. (Os04t0584600-01);S
imilar to Calcium-dependent protein kinase. (Os04t0584600-02);Si
milar to cDNA clone:001-041-E12, full insert sequence. (Os04t058
4600-03)
Parent gene strand +
Alternative splicing Os04g0584600_circ_g.4 Os04g0584600_circ_g.5 Os04g0584600_circ_g.6 Os04g0584600_circ_g.7 Os04g0584600_circ_g.8 Os04g0584600_circ_g.9
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0584600-01:3
Os04t0584600-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATCACGGAGTTGCTCCAGATCGGCCTCTTGATCCAGCTGTCCTATCTCGCATCAAGCAGTTC
TCTGCAATGAATAAGTTGAAGAAGATGGCTTTGCGGgtcaaacttttaccgatgttgtcggaag
cccatattacgtagctccagaagtgttgttgaaacactatggaccagaagctgatgtatggact
gcaggtgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAAACTTTTACCGATGTTGTCGGAAGCCCATATTACGTAGCTCCAGAAGTGTTGTTGAAACA
CTATGGACCAGAAGCTGATGTATGGACTGCAGGTGTCATTCTCTACATTTTACTAAGTGGTGTA
CCCCCATTCTGGGCAGGTAAATTTTGATTTCCCCCTTCAATTAACCTGGGAAGCTTGTTTTCTG
ATGATTGTAGCTTGACATTTTTCGTATGTATACAATGCAGAGACACAACAAGGAATATTTGATG
CTGTACTAAAAGGTTTCATTGATTTTGATTCTGATCCTTGGCCTGTGATCTCTGAGAGCGCAAA
GGATCTTATAACAAAAATGCTCAATCCTCGCCCAAAGGAACGCTTAACAGCACATGAAGTTCTA
TGTATGTTTCTTTTACTATATTTTTTTTGACAAAATTCTTTTACTATGTTGTACTCGTGGTCTT
ATTTTTCTCTCTAATGCCTATCCAATCACTTGACACATTTGCAACTGCCGGGAGAAAATGTAAC
ACTTCAACTCTTGCTCAGGCCATCCATGGATTCGTGATCACGGAGTTGCTCCAGATCGGCCTCT
TGATCCAGCTGTCCTATCTCGCATCAAGCAGTTCTCTGCAATGAATAAGTTGAAGAAGATGGCT
TTGCGG
Conservation Information
Conserved circRNAs osi_circ_014706
PMCS 0.325272265
Functional Information
Coding potential Y
Potential coding position 29533202-29532903(+)
Potential amino acid sequence MLNPRPKERLTAHEVLCHPWIRDHGVAPDRPLDPAVLSRIKQFSAMNKLKKMALRVKLLPMLSE
AHIT*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017