Detail information of Os10g0105700_circ_g.2


General Information
CircRNA Name Os10g0105700_circ_g.2
ID in PlantcircBase osa_circ_006105
Alias Os_ciR2055
Organism Oryza sativa
Position chr10: 429018-429465  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os10g0105700
Parent gene annotation Similar to predicted protein. (Os10t0105700-01)
Parent gene strand +
Alternative splicing NA
Support reads 11/3
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0105700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGATAATAAGTACACTTGAAAAATGTGGATTTCAAAATCGTTACTACATTCATTGTGACAGC
GCTCTCTCTGGAATGATGACGCCCTTTATGAAACAAgagagagctttttcccgatgggatcttg
tatgcttcaaatgattcacattactctgtcttcaaggcagctaaaatgtatagagttaagtgca
tcaggatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 328
Transcript exons: 429018-429211,429332-429465
GAGAGAGCTTTTTCCCGATGGGATCTTGTATGCTTCAAATGATTCACATTACTCTGTCTTCAAG
GCAGCTAAAATGTATAGAGTTAAGTGCATCAGGATTGCCACTACAGTTTCTGGAGAGATGAATT
ATGCAGACTTAAAATCTAAGCTACAACATAACACCAACAGCCCAGCAATTATAAATGCCAATAT
TGGTACTACCTTTAAAGGAGCTGTAGATGATATCGACCAGATAATAAGTACACTTGAAAAATGT
GGATTTCAAAATCGTTACTACATTCATTGTGACAGCGCTCTCTCTGGAATGATGACGCCCTTTA
TGAAACAA

Genomic sequence GAGAGAGCTTTTTCCCGATGGGATCTTGTATGCTTCAAATGATTCACATTACTCTGTCTTCAAG
GCAGCTAAAATGTATAGAGTTAAGTGCATCAGGATTGCCACTACAGTTTCTGGAGAGATGAATT
ATGCAGACTTAAAATCTAAGCTACAACATAACACCAACAGCCCAGCAATTATAAATGCCAATAT
TGGTTAGATTTCAAATCCAGTGATATTCACTTGTCTAATTTTATTTGTTTTTACCAATCTTTCC
ATGTTCTAGTAACACTAATATTGACTGATTATGCCCTGATTTTTTGGGTGATCTATAGGTACTA
CCTTTAAAGGAGCTGTAGATGATATCGACCAGATAATAAGTACACTTGAAAAATGTGGATTTCA
AAATCGTTACTACATTCATTGTGACAGCGCTCTCTCTGGAATGATGACGCCCTTTATGAAACAA
Conservation Information
Conserved circRNAs osi_circ_008783
PMCS 0.248762853
Functional Information
Coding potential Y
Potential coding position 429092-429056(+)
Potential amino acid sequence MYRVKCIRIATTVSGEMNYADLKSKLQHNTNSPAIINANIGTTFKGAVDDIDQIISTLEKCGFQ
NRYYIHCDSALSGMMTPFMKQERAFSRWDLVCFK*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017