Detail information of BGIOSGA032416_circ_g.1


General Information
CircRNA Name BGIOSGA032416_circ_g.1
ID in PlantcircBase osi_circ_008783
Alias Chr10:431927_432375(MH63RS2), Chr10:473087_473535(ZS97RS2), Chr10:431927_432375(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 279736-280184  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA032416
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA032416-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGATAATAAGTACACTTGAAAAATGTGGATTTCAAAATCGTTACTACATTCATTGTGACAGC
GCTCTCTCTGGAATGATGACGCCCTTTATGAAACAAggagagagctttttcccgatgggatctt
gtatgcttcaaatgattcacattactctgtcttcaaggcagctaaaatgtatagagttaagtgc
atcaggat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGAGAGCTTTTTCCCGATGGGATCTTGTATGCTTCAAATGATTCACATTACTCTGTCTTCAA
GGCAGCTAAAATGTATAGAGTTAAGTGCATCAGGATTGCCACTACAGTTTCTGGAGAGATGAAT
TATGCAGACTTAAAATCTAAGCTACAACATAACACCAACAGCCCAGCAATTATAAATGCCAATA
TTGGTTAGATTTCAAATCCAGTGATATTCACTTGTCTAATTTTATTTGTTTTTACCAATCTTTC
CATGTTCTAGTAACACTAATATTGACTGATTATGCCCTGATTTTTTGGGTGATCTATAGGTACT
ACCTTTAAAGGAGCTGTAGATGATATCGACCAGATAATAAGTACACTTGAAAAATGTGGATTTC
AAAATCGTTACTACATTCATTGTGACAGCGCTCTCTCTGGAATGATGACGCCCTTTATGAAACA
A
Conservation Information
Conserved circRNAs osa_circ_006105
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021