Plant Circular RNA Database

Detail information of 1_circ_ag.5

			
						 General Information
					
						CircRNA Name
						1_circ_ag.5
					
						ID in PlantcircBase
						ath_circ_006089
					
						Alias
						1:17158774-17162957
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 17158774-17162957  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							1_circ_ag.3 1_circ_igg.4 1_circ_igg.6 1_circ_igg.7 						
					
						Support reads
						2
					
						Tissues
						flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	1_circ_ag.5
ID in PlantcircBase	ath_circ_006089
Alias	1:17158774-17162957
Organism	Arabidpsis thaliana
Position	chr1: 17158774-17162957 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	1_circ_ag.3 1_circ_igg.4 1_circ_igg.6 1_circ_igg.7
Support reads	2
Tissues	flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTCATGTCAAACCAAATTAACGAAAGATCGCCTCTCTTGTGTCGGCAAATCATTAGAATAACGA
TGACGACCGAGAGAAGAGAGTCTCACTTGTGCTGTGctttcctttgacgtccagtgactcgcat
tatgcagaaaaaatcagtttcccgataacggaatgaacaaagaacgccactagctgaacgctac
cagtttct

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTCCTTTGACGTCCAGTGACTCGCATTATGCAGAAAAAATCAGTTTCCCGATAACGGAATGA
ACAAAGAACGCCACTAGCTGAACGCTACCAGTTTCTTCAAGAGACACTTGCAGGAAATGAAAAA
AAAAAAAAAAAAACAGCCTTAGACTGGTATCCAAGTTTTAACAAGAGTTGTGCATTGAATGATT
TATATCAACAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGA
GTTCGATTCTCGGAATGCCCCATTGACTCTTTTTTTCTAGGAAATAGCAGCTCAGAACAGTTGC
ATATATTAATGTGCCAGGTCTATAGTTTCTGATTTGTCACAGACTACATTCTGATAAAAGTAAC
AATTGTTGACAGGCCGTCAAATACCTTTGCTCAATTTTGACAACGTCTCTGTCATTAGTCATTG
AGCTTCAGCAATTGAACAATAATGACGTCCCTTGCATTTAGCAGGAGTAGAATAGAGACGCCAC
AAGTTTCTCGTTAACATTTTAACAAACAAAGGGGACCAGATCCTTACCATTTCCACAGAAAGGT
AGCAAGAGTTGGATATGTAGTCTGACGATTATGTTTCTGACTTCAGCTCTTGGAACTCTTGTAA
TGATTTTTGACGTTAAGTGCTGAACCCAAACAAACTAAATGGTGTAACACCAAAGTTTGGTCAT
CACATCCGTTGACTTTGATCTGTTCAACCAGTAAGCACCCCTTCTGCAGATTAAACCAGAAAAC
ATGAGGTAGTACTTAAAACAGCTTTGTTTCATTAGATTCTCTAAAGCTCACCCATATCAACTGG
GAAAGTATCACACATTCACACGCAAATTTCAATGTAAAGAAAAACATTTACAGAAATTTGAGAG
TCAAGAACAAGCCGAGCAGCAAACTGAAACCTTTTAAATGATATACAAAAGCACATGCATTAAC
TCTGGATGCAACAGCTACCTAGCCTAATTCTCAAATTCCGGTAAATTATGGGATACAAGATTTG
CATTTTCTGCCTAAATTATGAGACTTGAACAACATGCATTTCCATTGTATTGTTTAGAAAGAAG
AATTACAAAACATGAACTGTTCTTTCCACAAAGGGTAAGGAAACAAAGAGAATGATTTAACTGA
GAAACACCAATAACCAGGCATTTGGTCTAGTGGTATGATTTCAGCTTTGGGTGTGAGTTTGATT
CTCAGAATGCCCCATTGACGTATTTTCAAAACCATATGTTGTAAGTTCCACCTCGGAATTCTTG
ACTAACTATATATATATGTATTTGGTAACTGATTTGTCAAAGATCACATTCAGCTTTCAACCAA
GTGTACTTACTTAAAGCTTTACCAATAATATTGGTGTATTGTCTAGGGCACTAGTTAATAACCA
AGACCTGGAAATAGTGGTGTGATCAAGTCAAGACAAACAACATCATAATGATTGATATAAAAAA
CAAATTTTTAAAAATGTAAGACTAGAGGACTATTCTCTTCTAATGACTTTTCAGGGAAAGAGGT
TGAAACAATTGGATCAATATATTTCTGGGCCAATTTCCATCAAACTAGATATTTACATTCTAAA
AATCACATCACTGGACTGAGTAGAAAGAGATTCATAGAATAGATCTAGAAACATCTTCTTCATA
CTAAAATATTTAAGTAAAAGTCAACTAAGAGCAGGAGACCACAATGTGACCAAATATGGTGATC
TTCAATGCTTAAACTATATTGCAAGAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTG
CGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCATTGACTTTTTTAGATGTCTGATTCAAATA
CTAGCTAAGAGCTATCATGGCGAAATAAGTTCTTTAGTGCATTTTCTCACAATTTTCAGCAAGG
TTAAATTAGAAAACAATTTCCCATTACGCCTGTTCGGTACTGAAGTTTAACAAATAGAATGAGA
ATCGCATTGTACCTTGGCTTTGACTTCCACTGACTCGCATTATGCAGCAAGAAAACAGTTTTCT
CGGTAACGGAATGAGCAGAGAACGTCACTTGCTGAATGCTACCTAGTTTTCAAGAGACACCTGC
AAGAAGTGAAAAAAAAACACAGCCTTAAACTGGTATCCAAGTATCAACAACAGTTGTGCATTGA
ATGATTTATATCAACAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGG
TCCCGAGTTCGATTCTCGGAATGCCCCATTGACTTTTTTTGGGAGATATATGGTCTAAATGGTA
GCTCAGAAGTCAGAACAAGTTCATATAATGATGTGCCAAGTCTTTGGTTCCTAATTTTTCATAA
ACTACATTCAAATAGGAGTATGAATGCAAATCCAGCTTTGTTCTTAGATTTTCCTAACAATGAC
AGTTTCAAGCATCACAAGTAAAATAGATTGAACTTGTTGCCACTTTCACTGAAACTAATGGATA
CAAAAAAAAAAAAGACCTTGAACAACATGCATTTCCACTCTATTGTTCCGGAAGAAGAATTACA
AGCTAAGAACTATTCTTACCACAAAGGGTAAGGAAAAAAAAGAGAATGCTTTAACTGAAAAACA
CTAATAATCAGGCATTTGGTCTACTGGTATGATTTTTGCTTTCGGTCGAGTTTGATTCTCAGAA
TGCCCATTGACATTTTTCAGAACCATTTGTTGTAAGTGACATCTCAGAATCCTTGCATATATAT
GTATCTTTCACAGATCACATTCATCTAGTAACTGTGACTATATACACAAAACTTCGCCAATATA
ACTTGGGTATTGTCTATGGTACTAGCTAATAACAAGAATTTGGTATAGTGGTATGATCATATCA
AACTTTAAGACAAAGAAGAGCATAATGAATCGAACAACTGGAGAGTTATGAATATTTGATGTAA
AAGAGGCCAACTGACAAATGTAGGATGAGAGGACCATCCTCTTCTAATGATTTTTCGCGGAAGA
AGTTTGAACAAGTGGATCAATATATTTCTCGGGTGTTCCCATCTAGAGTACATTGCAAATTAGA
AATCCACATACTAAAGACCACATCATTGGAATGAGCTGAAAGAGATCTCATAGCATATAGATCC
AGAAACATCCTATTAAGACTAAATTGTTTAGTAAGAAGTCAACTAAGAGCACGAGCCCATAACT
AACCAAATAAGGTGATCTTCAATGTTTAAACTAAATTGATTAGCAACAGGGCATTTGGTCTAGT
GGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCGTTGACCT
TTTTGGATACCAGCTAAGAGCTATCATGGCAAAATATGTTCTATAGTGCATTTTCTCACAATTT
CTAGAATGTTTAAATTAGAAAACTATTTCCCATTACGCATGTTTGGTATAAACTGCTGAAATGC
AACAAATAAATGAGAATCACAACGCACCTTGGCTTTCACGTCCATTGACTTGATCACATTGTGC
AGCAAGAAAACAGTTTCTCGATGTCAGAATGAACCAAGAACATCACTAGCTGAATGTTGCCAAT
TTATCCAAGAGATAACTGCAGGAAGTGAAAAAAGAACACAGCTTAAAACTGGTATCCAAGTTCA
ACAACGACAGTTGTGCATTGAGTTATATATTATCAACAACAGGTCCCGACTTCGATTCTGGGAA
TGCCCCATTGACTCTTTTATTCTAGGAAATGGGAGCTCAGAACAGTTGCATATAGTAATGTGCC
AGGTCTATAGTTTCTGATTTGTCAAACAAAGCCAGCTTTGTTCTTAAATTTTCATTACAATAAA
CAGTTTCAATCATCACTGAAACTGACAGATACACAAAATGTATACTTTTGTGCCTTAACTACAT
AGCAGAATGAACTAGAAAGAGCAAAGAATGAAGATACTTACCCACTTTAGTGGAAGAAACGCAT
CCACTGATTCCTAAGAAGGAATTCTTGATTCATCTCGCATTTCAGGTGGATCCAGTCCCATAGA
TTTGAGAAAAGAAAGCTGGTTTCGGAATTTCGTCGAACATGTGGTAGGCTACGTCATGTCAAAC
CAAATTAACGAAAGATCGCCTCTCTTGTGTCGGCAAATCATTAGAATAACGATGACGACCGAGA
GAAGAGAGTCTCACTTGTGCTGTG
						
					

			
		

Sequences
Splice junction sequence	GTCATGTCAAACCAAATTAACGAAAGATCGCCTCTCTTGTGTCGGCAAATCATTAGAATAACGA TGACGACCGAGAGAAGAGAGTCTCACTTGTGCTGTGctttcctttgacgtccagtgactcgcat tatgcagaaaaaatcagtttcccgataacggaatgaacaaagaacgccactagctgaacgctac cagtttct
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTCCTTTGACGTCCAGTGACTCGCATTATGCAGAAAAAATCAGTTTCCCGATAACGGAATGA ACAAAGAACGCCACTAGCTGAACGCTACCAGTTTCTTCAAGAGACACTTGCAGGAAATGAAAAA AAAAAAAAAAAAACAGCCTTAGACTGGTATCCAAGTTTTAACAAGAGTTGTGCATTGAATGATT TATATCAACAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGA GTTCGATTCTCGGAATGCCCCATTGACTCTTTTTTTCTAGGAAATAGCAGCTCAGAACAGTTGC ATATATTAATGTGCCAGGTCTATAGTTTCTGATTTGTCACAGACTACATTCTGATAAAAGTAAC AATTGTTGACAGGCCGTCAAATACCTTTGCTCAATTTTGACAACGTCTCTGTCATTAGTCATTG AGCTTCAGCAATTGAACAATAATGACGTCCCTTGCATTTAGCAGGAGTAGAATAGAGACGCCAC AAGTTTCTCGTTAACATTTTAACAAACAAAGGGGACCAGATCCTTACCATTTCCACAGAAAGGT AGCAAGAGTTGGATATGTAGTCTGACGATTATGTTTCTGACTTCAGCTCTTGGAACTCTTGTAA TGATTTTTGACGTTAAGTGCTGAACCCAAACAAACTAAATGGTGTAACACCAAAGTTTGGTCAT CACATCCGTTGACTTTGATCTGTTCAACCAGTAAGCACCCCTTCTGCAGATTAAACCAGAAAAC ATGAGGTAGTACTTAAAACAGCTTTGTTTCATTAGATTCTCTAAAGCTCACCCATATCAACTGG GAAAGTATCACACATTCACACGCAAATTTCAATGTAAAGAAAAACATTTACAGAAATTTGAGAG TCAAGAACAAGCCGAGCAGCAAACTGAAACCTTTTAAATGATATACAAAAGCACATGCATTAAC TCTGGATGCAACAGCTACCTAGCCTAATTCTCAAATTCCGGTAAATTATGGGATACAAGATTTG CATTTTCTGCCTAAATTATGAGACTTGAACAACATGCATTTCCATTGTATTGTTTAGAAAGAAG AATTACAAAACATGAACTGTTCTTTCCACAAAGGGTAAGGAAACAAAGAGAATGATTTAACTGA GAAACACCAATAACCAGGCATTTGGTCTAGTGGTATGATTTCAGCTTTGGGTGTGAGTTTGATT CTCAGAATGCCCCATTGACGTATTTTCAAAACCATATGTTGTAAGTTCCACCTCGGAATTCTTG ACTAACTATATATATATGTATTTGGTAACTGATTTGTCAAAGATCACATTCAGCTTTCAACCAA GTGTACTTACTTAAAGCTTTACCAATAATATTGGTGTATTGTCTAGGGCACTAGTTAATAACCA AGACCTGGAAATAGTGGTGTGATCAAGTCAAGACAAACAACATCATAATGATTGATATAAAAAA CAAATTTTTAAAAATGTAAGACTAGAGGACTATTCTCTTCTAATGACTTTTCAGGGAAAGAGGT TGAAACAATTGGATCAATATATTTCTGGGCCAATTTCCATCAAACTAGATATTTACATTCTAAA AATCACATCACTGGACTGAGTAGAAAGAGATTCATAGAATAGATCTAGAAACATCTTCTTCATA CTAAAATATTTAAGTAAAAGTCAACTAAGAGCAGGAGACCACAATGTGACCAAATATGGTGATC TTCAATGCTTAAACTATATTGCAAGAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTG CGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCATTGACTTTTTTAGATGTCTGATTCAAATA CTAGCTAAGAGCTATCATGGCGAAATAAGTTCTTTAGTGCATTTTCTCACAATTTTCAGCAAGG TTAAATTAGAAAACAATTTCCCATTACGCCTGTTCGGTACTGAAGTTTAACAAATAGAATGAGA ATCGCATTGTACCTTGGCTTTGACTTCCACTGACTCGCATTATGCAGCAAGAAAACAGTTTTCT CGGTAACGGAATGAGCAGAGAACGTCACTTGCTGAATGCTACCTAGTTTTCAAGAGACACCTGC AAGAAGTGAAAAAAAAACACAGCCTTAAACTGGTATCCAAGTATCAACAACAGTTGTGCATTGA ATGATTTATATCAACAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGG TCCCGAGTTCGATTCTCGGAATGCCCCATTGACTTTTTTTGGGAGATATATGGTCTAAATGGTA GCTCAGAAGTCAGAACAAGTTCATATAATGATGTGCCAAGTCTTTGGTTCCTAATTTTTCATAA ACTACATTCAAATAGGAGTATGAATGCAAATCCAGCTTTGTTCTTAGATTTTCCTAACAATGAC AGTTTCAAGCATCACAAGTAAAATAGATTGAACTTGTTGCCACTTTCACTGAAACTAATGGATA CAAAAAAAAAAAAGACCTTGAACAACATGCATTTCCACTCTATTGTTCCGGAAGAAGAATTACA AGCTAAGAACTATTCTTACCACAAAGGGTAAGGAAAAAAAAGAGAATGCTTTAACTGAAAAACA CTAATAATCAGGCATTTGGTCTACTGGTATGATTTTTGCTTTCGGTCGAGTTTGATTCTCAGAA TGCCCATTGACATTTTTCAGAACCATTTGTTGTAAGTGACATCTCAGAATCCTTGCATATATAT GTATCTTTCACAGATCACATTCATCTAGTAACTGTGACTATATACACAAAACTTCGCCAATATA ACTTGGGTATTGTCTATGGTACTAGCTAATAACAAGAATTTGGTATAGTGGTATGATCATATCA AACTTTAAGACAAAGAAGAGCATAATGAATCGAACAACTGGAGAGTTATGAATATTTGATGTAA AAGAGGCCAACTGACAAATGTAGGATGAGAGGACCATCCTCTTCTAATGATTTTTCGCGGAAGA AGTTTGAACAAGTGGATCAATATATTTCTCGGGTGTTCCCATCTAGAGTACATTGCAAATTAGA AATCCACATACTAAAGACCACATCATTGGAATGAGCTGAAAGAGATCTCATAGCATATAGATCC AGAAACATCCTATTAAGACTAAATTGTTTAGTAAGAAGTCAACTAAGAGCACGAGCCCATAACT AACCAAATAAGGTGATCTTCAATGTTTAAACTAAATTGATTAGCAACAGGGCATTTGGTCTAGT GGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCGTTGACCT TTTTGGATACCAGCTAAGAGCTATCATGGCAAAATATGTTCTATAGTGCATTTTCTCACAATTT CTAGAATGTTTAAATTAGAAAACTATTTCCCATTACGCATGTTTGGTATAAACTGCTGAAATGC AACAAATAAATGAGAATCACAACGCACCTTGGCTTTCACGTCCATTGACTTGATCACATTGTGC AGCAAGAAAACAGTTTCTCGATGTCAGAATGAACCAAGAACATCACTAGCTGAATGTTGCCAAT TTATCCAAGAGATAACTGCAGGAAGTGAAAAAAGAACACAGCTTAAAACTGGTATCCAAGTTCA ACAACGACAGTTGTGCATTGAGTTATATATTATCAACAACAGGTCCCGACTTCGATTCTGGGAA TGCCCCATTGACTCTTTTATTCTAGGAAATGGGAGCTCAGAACAGTTGCATATAGTAATGTGCC AGGTCTATAGTTTCTGATTTGTCAAACAAAGCCAGCTTTGTTCTTAAATTTTCATTACAATAAA CAGTTTCAATCATCACTGAAACTGACAGATACACAAAATGTATACTTTTGTGCCTTAACTACAT AGCAGAATGAACTAGAAAGAGCAAAGAATGAAGATACTTACCCACTTTAGTGGAAGAAACGCAT CCACTGATTCCTAAGAAGGAATTCTTGATTCATCTCGCATTTCAGGTGGATCCAGTCCCATAGA TTTGAGAAAAGAAAGCTGGTTTCGGAATTTCGTCGAACATGTGGTAGGCTACGTCATGTCAAAC CAAATTAACGAAAGATCGCCTCTCTTGTGTCGGCAAATCATTAGAATAACGATGACGACCGAGA GAAGAGAGTCTCACTTGTGCTGTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.167682994

Conservation Information
Conserved circRNAs	NA
PMCS	0.167682994

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 1_circ_ag.5

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