Detail information of 1_circ_igg.4


General Information
CircRNA Name 1_circ_igg.4
ID in PlantcircBase ath_circ_006088
Alias At_ciR1421, AtciR145
Organism Arabidpsis thaliana
Position chr1: 17158774-17160881  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method CIRI, find_circ, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.3 1_circ_ag.5 1_circ_igg.6 1_circ_igg.7
Support reads 3/12
Tissues leaf/seed
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCACTGACTCGCATTATGCAGCAAGAAAACAGTTTTCTCGGTAACGGAATGAGCAGAGAACG
TCACTTGCTGAATGCTACCTAGTTTTCAAGAGACACctttcctttgacgtccagtgactcgcat
tatgcagaaaaaatcagtttcccgataacggaatgaacaaagaacgccactagctgaacgctac
cagtttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCCTTTGACGTCCAGTGACTCGCATTATGCAGAAAAAATCAGTTTCCCGATAACGGAATGA
ACAAAGAACGCCACTAGCTGAACGCTACCAGTTTCTTCAAGAGACACTTGCAGGAAATGAAAAA
AAAAAAAAAAAAACAGCCTTAGACTGGTATCCAAGTTTTAACAAGAGTTGTGCATTGAATGATT
TATATCAACAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGA
GTTCGATTCTCGGAATGCCCCATTGACTCTTTTTTTCTAGGAAATAGCAGCTCAGAACAGTTGC
ATATATTAATGTGCCAGGTCTATAGTTTCTGATTTGTCACAGACTACATTCTGATAAAAGTAAC
AATTGTTGACAGGCCGTCAAATACCTTTGCTCAATTTTGACAACGTCTCTGTCATTAGTCATTG
AGCTTCAGCAATTGAACAATAATGACGTCCCTTGCATTTAGCAGGAGTAGAATAGAGACGCCAC
AAGTTTCTCGTTAACATTTTAACAAACAAAGGGGACCAGATCCTTACCATTTCCACAGAAAGGT
AGCAAGAGTTGGATATGTAGTCTGACGATTATGTTTCTGACTTCAGCTCTTGGAACTCTTGTAA
TGATTTTTGACGTTAAGTGCTGAACCCAAACAAACTAAATGGTGTAACACCAAAGTTTGGTCAT
CACATCCGTTGACTTTGATCTGTTCAACCAGTAAGCACCCCTTCTGCAGATTAAACCAGAAAAC
ATGAGGTAGTACTTAAAACAGCTTTGTTTCATTAGATTCTCTAAAGCTCACCCATATCAACTGG
GAAAGTATCACACATTCACACGCAAATTTCAATGTAAAGAAAAACATTTACAGAAATTTGAGAG
TCAAGAACAAGCCGAGCAGCAAACTGAAACCTTTTAAATGATATACAAAAGCACATGCATTAAC
TCTGGATGCAACAGCTACCTAGCCTAATTCTCAAATTCCGGTAAATTATGGGATACAAGATTTG
CATTTTCTGCCTAAATTATGAGACTTGAACAACATGCATTTCCATTGTATTGTTTAGAAAGAAG
AATTACAAAACATGAACTGTTCTTTCCACAAAGGGTAAGGAAACAAAGAGAATGATTTAACTGA
GAAACACCAATAACCAGGCATTTGGTCTAGTGGTATGATTTCAGCTTTGGGTGTGAGTTTGATT
CTCAGAATGCCCCATTGACGTATTTTCAAAACCATATGTTGTAAGTTCCACCTCGGAATTCTTG
ACTAACTATATATATATGTATTTGGTAACTGATTTGTCAAAGATCACATTCAGCTTTCAACCAA
GTGTACTTACTTAAAGCTTTACCAATAATATTGGTGTATTGTCTAGGGCACTAGTTAATAACCA
AGACCTGGAAATAGTGGTGTGATCAAGTCAAGACAAACAACATCATAATGATTGATATAAAAAA
CAAATTTTTAAAAATGTAAGACTAGAGGACTATTCTCTTCTAATGACTTTTCAGGGAAAGAGGT
TGAAACAATTGGATCAATATATTTCTGGGCCAATTTCCATCAAACTAGATATTTACATTCTAAA
AATCACATCACTGGACTGAGTAGAAAGAGATTCATAGAATAGATCTAGAAACATCTTCTTCATA
CTAAAATATTTAAGTAAAAGTCAACTAAGAGCAGGAGACCACAATGTGACCAAATATGGTGATC
TTCAATGCTTAAACTATATTGCAAGAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTG
CGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCATTGACTTTTTTAGATGTCTGATTCAAATA
CTAGCTAAGAGCTATCATGGCGAAATAAGTTCTTTAGTGCATTTTCTCACAATTTTCAGCAAGG
TTAAATTAGAAAACAATTTCCCATTACGCCTGTTCGGTACTGAAGTTTAACAAATAGAATGAGA
ATCGCATTGTACCTTGGCTTTGACTTCCACTGACTCGCATTATGCAGCAAGAAAACAGTTTTCT
CGGTAACGGAATGAGCAGAGAACGTCACTTGCTGAATGCTACCTAGTTTTCAAGAGACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.307165501
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress