Detail information of Os03g0736000_circ_g.3


General Information
CircRNA Name Os03g0736000_circ_g.3
ID in PlantcircBase osa_circ_021692
Alias NA
Organism Oryza sativa
Position chr3: 30167308-30168108  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os03g0736000
Parent gene annotation Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os03t07360
00-01);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os0
3t0736000-02)
Parent gene strand -
Alternative splicing Os03g0736000_circ_g.1 Os03g0736000_circ_g.2 Os03g0736000_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0736000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAACAGGGATGTACCGGATATTGCTGTGCTTGCATAACAGGCACATTATCATGAAGTTGTTCCT
TGTGATGCAACTCCATAGCATAATCTGAAGTGCTACttgtagcggtggaggttgctcagcattg
tagcaagctggaatatgaaactcaggttctccttttgctggctcatttgaccatggagaaccaa
atgtcttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTAGCGGTGGAGGTTGCTCAGCATTGTAGCAAGCTGGAATATGAAACTCAGGTTCTCCTTTT
GCTGGCTCATTTGACCATGGAGAACCAAATGTCTTGTATAGATTGTCTGGTGAGTTCAAGTTTA
AACCCAATGTTGTCAAATCCATTCCTAAAGCAAGAGATGCTAAGTCAGCATCATTCATCCTGAT
AACTCCCAGCAATCCCATCAAACCATAAGGATCAGGTGGTGTTTGCCCTCCCTGGATGGACTTT
AGACTTTGATCTCTGTATGACTGTGTAGCTGAAGACACCTGCTGCAATCTGAAAGGATTTTGAG
TTTGAGGCTGCTGGTATTGTTGGATAAGTTGCTCGTATGATCCCAAACTAGAAGTTTGACTTGC
AGAAGATCTTAATCCGATATTTTGGGGACCAGCATTCTGAACCTGATAAATCATAATTGATCAT
TATTACTAGCATCAAAGGATCAAAACAGCAAAGTTGGATATATGCCTGATCAGAACCATGGTAA
ACGCGGTAGACATTGATTGCTAGAGTTTTAAGAATTTCCATTAGTACTTACTGAATTAGCACCT
TGCTGGTGTTGCTGACGATTTGGTGGGTAGTTACTTCCTAAATTAAAGCCAACTGACCTTGACA
TCTGTGTAAATGTGCAAATTTGTCAGAAAAAAACACAAAGAAGAAATTGTTAAAAATTCAGAAA
CAGGGATGTACCGGATATTGCTGTGCTTGCATAACAGGCACATTATCATGAAGTTGTTCCTTGT
GATGCAACTCCATAGCATAATCTGAAGTGCTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.21789046
Functional Information
Coding potential Y
Potential coding position 30167383-30168107(-)
30168090-30167923(-)
Potential amino acid sequence MSQQKENLSFIFQLATMLSNLHRYK*(-)
MELHHKEQLHDNVPVMQAQQYPMSRSVGFNLGSNYPPNRQQHQQGANSVQNAGPQNIGLRSSAS
QTSSLGSYEQLIQQYQQPQTQNPFRLQQVSSATQSYRDQSLKSIQGGQTPPDPYGLMGLLGVIR
MNDADLASLALGMDLTTLGLNLNSPDNLYKTFGSPWSNEPAKGEPEFHIPACYNAEQPPPLQVA
LQIMLWSCITRNNFMIMCLLCKHSNIRCQGQLALI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017