Detail information of Os03g0736000_circ_g.4


General Information
CircRNA Name Os03g0736000_circ_g.4
ID in PlantcircBase osa_circ_021693
Alias NA
Organism Oryza sativa
Position chr3: 30167308-30170315  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os03g0736000
Parent gene annotation Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os03t07360
00-01);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os0
3t0736000-02)
Parent gene strand -
Alternative splicing Os03g0736000_circ_g.1 Os03g0736000_circ_g.2 Os03g0736000_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0736000-02:2
Os03t0736000-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACCAAGGGAATTATTTCCTCCTTGTATTTGGTTCTGAGATAATGAACCTCCAGACGTCGGAT
ATGAACTCCCCATCATGTTCATCATTTGAGGCGATCttgtagcggtggaggttgctcagcattg
tagcaagctggaatatgaaactcaggttctccttttgctggctcatttgaccatggagaaccaa
atgtcttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTAGCGGTGGAGGTTGCTCAGCATTGTAGCAAGCTGGAATATGAAACTCAGGTTCTCCTTTT
GCTGGCTCATTTGACCATGGAGAACCAAATGTCTTGTATAGATTGTCTGGTGAGTTCAAGTTTA
AACCCAATGTTGTCAAATCCATTCCTAAAGCAAGAGATGCTAAGTCAGCATCATTCATCCTGAT
AACTCCCAGCAATCCCATCAAACCATAAGGATCAGGTGGTGTTTGCCCTCCCTGGATGGACTTT
AGACTTTGATCTCTGTATGACTGTGTAGCTGAAGACACCTGCTGCAATCTGAAAGGATTTTGAG
TTTGAGGCTGCTGGTATTGTTGGATAAGTTGCTCGTATGATCCCAAACTAGAAGTTTGACTTGC
AGAAGATCTTAATCCGATATTTTGGGGACCAGCATTCTGAACCTGATAAATCATAATTGATCAT
TATTACTAGCATCAAAGGATCAAAACAGCAAAGTTGGATATATGCCTGATCAGAACCATGGTAA
ACGCGGTAGACATTGATTGCTAGAGTTTTAAGAATTTCCATTAGTACTTACTGAATTAGCACCT
TGCTGGTGTTGCTGACGATTTGGTGGGTAGTTACTTCCTAAATTAAAGCCAACTGACCTTGACA
TCTGTGTAAATGTGCAAATTTGTCAGAAAAAAACACAAAGAAGAAATTGTTAAAAATTCAGAAA
CAGGGATGTACCGGATATTGCTGTGCTTGCATAACAGGCACATTATCATGAAGTTGTTCCTTGT
GATGCAACTCCATAGCATAATCTGAAGTGCTACCTGATAATTCGAAAGGTTAATACTTTGCACA
ACTCAGCAAAGGGCAAAGATGGTAGCACAGTGCGCACCAAAAGAGAAAGAAGATTAAATAGCAA
TCTGAGGTCAAGCATGTCCTATGATCATGGAATAAATTAAAAGGCAAGTACTGAAGTAGCAGGT
TACGACCATCTAAATACGTGACAAGTAATAAACTCAAAAGGCAGGAAATAGATTACAACCATCC
AAAATACATGACACTGACAACAGAGATCAAGAAGCAAAGCAGTCATAAAAGCGGCAAGTAAGTT
GGAAACATTTTTGGCAGACCAACGGACAAAATAAAACAAAGCTGTGATGCTTGGTGCCCATGTC
CCGCCAAATTGACAGGTATGACAGTAAACTCTTAGTGCCAAAATATGCATACACCTTTTTAAGT
GATTTAATCCAGAAACATACCGAAATTTAATCCATGATCTCCATGAATCCAAACTCAAACACGT
ACTGTAAGTATTGTTCGAATAAAATTTTTGGCAAGCCTAAAATTTCTTTTAAACGTGAATAGCA
ATTATTGCAAATTTACAGGTATGACAGTAATAAACTCTTAGTACCAAAATATGCACCCTTGTAA
TAGTAATAGATTAAGGAACATCCAAAATTTTAGTCCATAATCTCCATGAATCCAAATTCAAACC
ATGTACTATAAGTATCATTCGAAAAAAAATTAGCAACTCTAAACTATATTTTTAAACGTTAATG
TTGGATATTGCAAACTTTCTGTGAGCAAAATCTGTGGGCCCTAAAGTTTTGCAAAAAAAAAAAG
TCACAAATATTTTTTCACCGCCATTAATAGTCCCAAATAAGTTCCATAATTTTTAGAGTTGCCT
CAAGGCTTCGATCACAGTTGCCTCAAAAATGTGACCGCCAGGCATGTGGCGCTAAGATAAATTT
CCCAGGTTCTAAGTTTAGTTGGCACAGCTAGGTCAGATGATCTAAGTTTCCCTTCAGTTAGTTT
ACTGCCACGATAGATATAATTGTACATTCGCTCGATTGAATTGGACTCGAACATCTTGTAATGG
TTCAGCTGCTAAAACTCCTTACGTGTTGCCTATTGGTTCATTTTTCCGTATGACCATCAGTTTT
CATAAACAAAACGATAGCCATGGGTTAGGCTATGTTGCCAAAACAAGAAACATAACAAGAGGGT
ACCAAAAACTATGTATGAGTTACGATAAGAAAACCATTTACTACCGTCGTCAAAAGTAAATAAA
AGGTTCACCAACGTGGATGTTATCATGTCTCCATCAATATAAGATACCATTTCATGCCCAAATT
GAAGGGTACTTGTTTTGGCAATGGAAACTGAGACAATGGGATTGCTAGGACCTCTATACATGTT
TGCCGGTTGCACATCAACGGATCGACCCTTTTCTCCAAGCAACGTGTTAGCACATTTTCATTGT
CGATCATCAATGTCTATTGTCTAATTATGATTTGTTGTAATCCCAAGTGCTCCGATATCATAAT
TGTAGTTTCCAGCACATACCGGTAGCCCCATCCTTAGGCCGTCTTAAATTAACCAAAAGTGGGA
ATGCCATTGCAAGTATATGAATGGTACTATAATTATTCAGTAATGCAAGAAAAAATATGGCAGC
CTTCCATAAAAGATAAAATGTCAAAGCAAAATGGATTTTGTAACACGTAGTTCTATGACATGCT
AGCGAGGGCCAGTTGAAAGTTGAGACAACAAATTGTAACAGTCATGCAGCTGATATTGCATGAT
ACACCAAGTATAATTAATCAAAACACCCTCACTGAATGTCAACGAACGTTCTACAATAATATAG
CTGTAACCACCTTTGTATCCAGGTAAAGCTGGGAAGTCTTCATTTTGAATGCTAAATTCCTGGT
TTTGTTGAACAATGGTGTTAACACCAACTCCTTGCTTCCGCAGTGAGCCTGCTATTTAAGGAAA
TTATCAAGGTATCCTTCCAGTTAATGAAAAATATCTTTGAAATCATTACCATATTGTCCTTGCG
GACCACCAGCAGAACTAGGTCGACCAGTCAATTGGGGAAAATCATTCATGTCATATGGAGCACT
GTCATTGGCATCATGCAGCATCCCCATGGAACCAAGGGAATTATTTCCTCCTTGTATTTGGTTC
TGAGATAATGAACCTCCAGACGTCGGATATGAACTCCCCATCATGTTCATCATTTGAGGCGATC
Conservation Information
Conserved circRNAs NA
PMCS 0.122425227
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017