Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d004396_circ_g.3 |
ID in PlantcircBase | zma_circ_001094 |
Alias | circ2394 |
Organism | Zea mays |
Position | chr2: 108746785-108751424 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d004396 |
Parent gene annotation |
Vacuolar protein sorting-associated protein 54 chloroplastic |
Parent gene strand | - |
Alternative splicing | Zm00001d004396_circ_g.1 Zm00001d004396_circ_g.2 Zm00001d004396_circ_g.4 Zm00001d004396_circ_g.5 Zm00001d004396_circ_g.6 |
Support reads | 16 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d004396_T025:10 Zm00001d004396_T031:9 Zm00001d004396_T045:10 Zm00001d004396_T014:10 Zm00001d004396_T033:10 Zm00001d004396_T034:10 Zm00001d004396_T007:10 Zm00001d004396_T041:10 Zm00001d004396_T040:10 Zm00001d004396_T043:10 Zm00001d004396_T027:10 Zm00001d004396_T019:10 Zm00001d004396_T003:10 Zm00001d004396_T049:10 Zm00001d004396_T009:10 Zm00001d004396_T047:10 Zm00001d004396_T018:10 Zm00001d004396_T016:10 Zm00001d004396_T028:10 Zm00001d004396_T039:8 Zm00001d004396_T036:9 Zm00001d004396_T029:10 Zm00001d004396_T048:10 Zm00001d004396_T021:10 Zm00001d004396_T038:10 Zm00001d004396_T004:10 Zm00001d004396_T002:10 Zm00001d004396_T023:5 Zm00001d004396_T006:10 Zm00001d004396_T012:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.007614896 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |