Detail information of Zm00001d004396_circ_g.3


General Information
CircRNA Name Zm00001d004396_circ_g.3
ID in PlantcircBase zma_circ_001094
Alias circ2394
Organism Zea mays
Position chr2: 108746785-108751424  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d004396
Parent gene annotation Vacuolar protein sorting-associated protein 54 chloroplastic
Parent gene strand -
Alternative splicing Zm00001d004396_circ_g.1 Zm00001d004396_circ_g.2 Zm00001d004396_circ_g.4 Zm00001d004396_circ_g.5 Zm00001d004396_circ_g.6
Support reads 16
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d004396_T025:10
Zm00001d004396_T031:9
Zm00001d004396_T045:10
Zm00001d004396_T014:10
Zm00001d004396_T033:10
Zm00001d004396_T034:10
Zm00001d004396_T007:10
Zm00001d004396_T041:10
Zm00001d004396_T040:10
Zm00001d004396_T043:10
Zm00001d004396_T027:10
Zm00001d004396_T019:10
Zm00001d004396_T003:10
Zm00001d004396_T049:10
Zm00001d004396_T009:10
Zm00001d004396_T047:10
Zm00001d004396_T018:10
Zm00001d004396_T016:10
Zm00001d004396_T028:10
Zm00001d004396_T039:8
Zm00001d004396_T036:9
Zm00001d004396_T029:10
Zm00001d004396_T048:10
Zm00001d004396_T021:10
Zm00001d004396_T038:10
Zm00001d004396_T004:10
Zm00001d004396_T002:10
Zm00001d004396_T023:5
Zm00001d004396_T006:10
Zm00001d004396_T012:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAAAACTGGGAGTAACTCTCCTACTGTGGTTTTGATTGAAGCTTTCATAACAGTTATAAGTGT
ATCCCGGTAAATTCTGAGAACAGCAGGAAGTTTGTCcctttgtaacagctttagcaaattgact
cggctgcacgtcattatcctctgggccattccagccttccacaatttggggtaattttctaaga
tttgcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTGTAACAGCTTTAGCAAATTGACTCGGCTGCACGTCATTATCCTCTGGGCCATTCCAGCC
TTCCACAATTTGGGGTAATTTTCTAAGATTTGCAAGCAACCTCTCTCTCATTATCTGGACAAGT
TTGTTGTGAATTTCATCTCGATGGATCTTGTAGTCCTGTTATTTCATTTAAAAAACTTCTATGA
AAATGCATTCGTGAAAGGACAAGAAAGGATAGTTGCACTCAAGACTCATGAATCGCTGTGACTC
AAATGCCAATATAAAAAATTGGAATTGCACCTGAGCTACTCTATCCAGCTCAGACATTAACAGA
TGTTTGCGCGCTTCAGGTATTTTCAGGAAAAGTACTCGCCTGATATCTGCAGTTTCAAGGAAAA
CTTATAAAAACTGGAAAGAAAATATATCATGGTCACTCACTGCATTTCACAGCATATATCCCAT
CACTCGAGTTGGCCTGCCATCATTTTTGTATACAAGATTGTAGCTAGTACTAGTTATTAGTGTT
TGAACTCTTTAATATGTAAGAGACTCAATTGTACCATGTGATTAATATGAAGCTATGAGCACGT
GTGGTCATTTCTCAGTTTTGTATGAGACTTAGTTCTCCTTGGGTCTGTGTCTTGTAGCTATAGA
GTATGGACATTAGTACTTCAAAATTTTATGGAAGTAGGATCCAAAAATAGCAAATCAATACAGT
GCATGTTTGGTTCCTAGCATCAGCAATTCAGTGCAGCAAAAGAAAAATCATGACAAACTCGTGG
GGTAATTACAGTTTGGACATACTGTGCTAAAAAAATTTAATTGGTTAGGCAGTAGACTTGTATG
AAAAACACATGGTCTTTAGAACTCCAGTAGCTAAGCATCCTGAAGTACTCCAAGAATGTAGAAA
TGGTAATTTGTAGAAGATTAAAATAAATGGTTACCTGGAATTAAAGAATGCATAAAACTAATGA
TTTGACTCGCCAAAGCTAAATGTTTGGACGTAATTGATTTAAGTCCAGACACCTGAGAAGCAAA
ACAGAAATAAAAAGGTCAGTAAATTAGGAGTATTGCAAGGAAGAAAACTGAGCTTCTAAATCAA
AAAGCTCTTGAGGTTGGTATTGGCTGTACTGAAAAATAAATAAAAATTGATTAAAATAGTGTCC
AAATAGGAACAGCTTATTTTGCAACTAGTTGTTCCATGCAGTGATGCATGTGATTCAGTGTATG
CACCTCAGGTTGTTTAAAAAATGCAGACATTACTCACGTCAAGTGAAAATCACATTAAACATTT
GTATACAGTTGCCAATGAAATAAAGAGGCATTCTTAATAACTGAAATGGCATGCTGATATACCT
GCATGGCTCCTGCACCGAGAACAAGTTGGCAAGTCCTAGTGTTGAAAAGCTTTAATATTTCCAC
AACACGTTGGACCACCTCCAAAGATAGTGATGGTAAACATTTACTGATGTCAACGTATTCGGAT
AACATCTTCAACAGTATTAAACCACTGCAAAACCAATAAAGCATTGTTAGAGAGAGGCATGGGT
TCCAAAAGAAGAAAATATTTTTCCTAAAATGCACAGGAGAGCTGTGCATCATTATATTAAGGCC
CCGTTTGGTTTGAGATTAGTCCCTCCATTTTAGTCTCATTTAGTCCCTAAATAGCCAAACGGTG
TGACTAAAAGGGACTAAACCATATTAATTCCACCTTTTGCGTCTCAATTATTTCAGTTGCGCTG
ATGGCGGGACAATGTTAAAGGACATTTTAGTCTTCTCATGAGTCATTTAATGTGTTCTGAATAT
ATTTATAGTCTCTGCAACCAAACAGGGCAGGGACTAAACTTTAGTCCCTCGACTAAACTTTAGT
CCCTTGACTAAATGAACCAAACAGGCCCTAAGAATAGATGAGTTCCAAAACAGACCAGTACAAG
AAATAAAGAAGCCACCTTACGGTGGCCAAAACAGAAAATACATAAAGGAGTCGATAACTACTCC
AAGGATACTACCACAGCCTAACCTCCAAGAAGAAAATATTTTTATATTAAAGAAACAACTTAGA
ACAGTGAACTCAAAATAACGAGAACAAATCAATAAATACATGCCTGTAACAAATACTACTATTT
ATTTAAACTAAATTTACAGAATACAGACTGATAGCTACCCAACAGTCAAACACATTTCATTTCA
GCAGCGCAAAGTTCATAAGTAGAGACTAAATATCGAATTATTGAAAGGTAAATATAGATGACTA
ACCAGTTTACCATATGATAGCCAACACCTCCATGTACAATCGTTTGCAAGGTGGACTTTAGATT
CCCGGCAACATTATTTTCAGTCTGTGAAGTGAATTCAACCTTGTTTTCACCAGTCCCGGATGTT
ACTTTGCCATTATCAGCAATATTTTTAGCTGAATATGTCGGTTCTTGACTTGTAGACCGATGAT
CACTAAACTTTGAGTTATCATCAGTGCTAGGCATCTCCATGCCATTAACAGAAGAATAAGTGGA
TGAAAGTGAAAGAACGATTGCTTGAAACTCTTCAGGAACATCCACAGCAACCCACGTCTCTTGA
TCTAGAACTGCCTTGATTTTTGTCATCTTAAAAAAATAATGAAAGTTTTTAGTTTCAAAAATTA
GGGGAAAGGGAAACACAATTTAGTTTAGCTAGTCTTAACTATCAAGGGCCTTGGATAATCCAAA
ACTCACATGATTTGACTTTTGAACAGCCAGAGAAGATGAACTTCATTAATTGAAATATATTATT
CCACCACCATTTTGATCTAAAAAATAGTTCCCTTCGTTCCAAATTATGTCATTCTAGCTTTTCT
AGATACATAATAAAAGCTAGTATCTAGACATAGTGTATATCTAGATGCATAACAATTTAACAAA
ATTTATGTATCTATAAAAGTTAGAACAACTTGTAATTCAAAATGGAGGGGGGTATTTCAAAGTA
AAGATCAACTATTGATAATGTAAAAATGGGTATAATAATCAAATTGAGCATCCGTGCTGTATTC
AACTTGATGGACAACCAGTCATCCATAACTGAGGGAAAGTTAAGTGATTTTTTTCCATTCAATA
ATGATGGTCAATAATTGTTTTGGAAGTTTCTAATCAAATAGGTGAAATTTGAATAATAGGGTTT
AACTTCAACCGTTCAACGACATAACTGCAACATTGTTTTACTGACCCGAACATTATGCTGATAA
TCAACGAATTGCTTCGATTGTTGATGTAGGATTCCACGAATGTTGTAACCCAACCTGCCTCCAA
TCTACAAGAATAAGAGGCTAAGATAACATATAACTTGCTTATATGCAATAAATGCAAATGATTT
TGTGTATTTAATCCAAACAAGACGTAACCTTTTCTGTAGCAGCTATAAATTCTTCTGTTATGTT
GTAGATGATCAAGAATTCTTGAAGCCTTAACCTGGGATGTAAAGCAGAACGAACACCTAGCAGC
TTAGCCCACCGTCCATGGGCAGCATCACAAGCCGCGAAAACTGCTTCAGTGTTCTCTCTCAAGA
CATCAGCCCTGCATGAAATGATAAATTGTGATAATCTGCTATAGTAACTGATCACAGGCATACC
GTGACATCAGAAATGAACTTATAATTTGCATCTTCACATGGAATAGACAATAGAGCTTATAATT
TGCATCTTCACATGGAATAGACAATAGAGGGCAAGTTGCAGCTTAACTTACCGAACATTCTTTA
ACGAATTTATAATGGAAAAATCATTTGTTTTTCCTTGGACAAATGGGATCTTGGAAGTACTCCG
TGTAAGAGTATTAGAGCCTCTTGAAGAGTCATTTTCTTGGGTATCAGGAATAACTGTACCACCA
TGTTGTAACGTAGGATTACTAGCATCAACACCTAACGTTCCATCAAGGTTTCCCATGACCCACT
CAACTATTCTTTTCACTTCAGCTGCTTGCTGTAAATGTACCTGAAATCATAAAGATGTCGAAGC
CATTATTGTGTGTGTGTGTTTGGGGGGGGGGGGGGGGGGTAACTAACATATGGTACCTAGTGGC
CAATTTGTATTTGATGTGCACCCATTTAATACAAAATCACATGTCATGAAAACAAATTAAACAA
TCAGGACATAGGCTATAGAGGGCAACATAAAGATTGCTTAGCTGAACCAAGTAAACCTCAATAA
GGGATAAAAACAGTGCAGGGCTTATCCAAGTATACTTTATCCCTGAACACAAGAGCTAATTTAC
CCAGGATCAAATTTTCCTAGGATCTTTGTCCCAACTCCCAAAATAGGAAAATGGAATTCTTATT
AAGAGTTAATTTACCTGTACTATCCTGAAAATGGCAGATAAAAGTTGAACAAATCCTTCAGATG
AAAGACTCCGCAACTTATTTGCTAAGGACTGGCCTCCAGCTGCAGTACGTTAAAAGGTCAACAG
GCATAGAAAGGTTAACATAAAAAATGAAAAACTCAGAAAAGAGATAGTGACTGGGTGCAAATAA
TACCATCAGCATCGGTAGCTCTGTCTCCAGTTACTGAGTCAGAATCTATTGGTCTGGCAGTTAA
AACTGGGAGTAACTCTCCTACTGTGGTTTTGATTGAAGCTTTCATAACAGTTATAAGTGTATCC
CGGTAAATTCTGAGAACAGCAGGAAGTTTGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.007614896
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b