Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d004396_circ_g.3 |
| ID in PlantcircBase | zma_circ_001094 |
| Alias | circ2394 |
| Organism | Zea mays |
| Position | chr2: 108746785-108751424 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ui-circRNA |
| Identification method | CIRCexplor2 |
| Parent gene | Zm00001d004396 |
| Parent gene annotation |
Vacuolar protein sorting-associated protein 54 chloroplastic |
| Parent gene strand | - |
| Alternative splicing | Zm00001d004396_circ_g.1 Zm00001d004396_circ_g.2 Zm00001d004396_circ_g.4 Zm00001d004396_circ_g.5 Zm00001d004396_circ_g.6 |
| Support reads | 16 |
| Tissues | seedling leaves |
| Exon boundary | No-Yes |
| Splicing signals | CT-TA |
| Number of exons covered | Zm00001d004396_T025:10 Zm00001d004396_T031:9 Zm00001d004396_T045:10 Zm00001d004396_T014:10 Zm00001d004396_T033:10 Zm00001d004396_T034:10 Zm00001d004396_T007:10 Zm00001d004396_T041:10 Zm00001d004396_T040:10 Zm00001d004396_T043:10 Zm00001d004396_T027:10 Zm00001d004396_T019:10 Zm00001d004396_T003:10 Zm00001d004396_T049:10 Zm00001d004396_T009:10 Zm00001d004396_T047:10 Zm00001d004396_T018:10 Zm00001d004396_T016:10 Zm00001d004396_T028:10 Zm00001d004396_T039:8 Zm00001d004396_T036:9 Zm00001d004396_T029:10 Zm00001d004396_T048:10 Zm00001d004396_T021:10 Zm00001d004396_T038:10 Zm00001d004396_T004:10 Zm00001d004396_T002:10 Zm00001d004396_T023:5 Zm00001d004396_T006:10 Zm00001d004396_T012:10 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.007614896 |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chen et al., 2017b |