Detail information of BGIOSGA033203_circ_g.2


General Information
CircRNA Name BGIOSGA033203_circ_g.2
ID in PlantcircBase osi_circ_002876
Alias 10:17829010|17831150
Organism Oryza sativa ssp. indica
Position chr10: 17829010-17831150  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033203
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033203_circ_g.1 BGIOSGA033203_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA033203-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGACCAACCTGAAGATCTTAATCAGTCGGGTACAACATCTCTTTTTAGTGCTAAAGATGAATCC
AGTCTTTTGGAAGACTGCCTCTTGGCATCAGTTAAGagacttctgacactgtgtccagagtcgg
aggaaattttaaagagacattaagggagttgggcggtcttgatagtatttttgacgttatgatg
gattgcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGACTTCTGACACTGTGTCCAGAGTCGGAGGAAATTTTAAAGAGACATTAAGGGAGTTGGGCGG
TCTTGATAGTATTTTTGACGTTATGATGGATTGCCATTCAACATTGGAGGTGAGATCTCGCTAA
CATCGCATATTTTACACTTCCTTTGTTCAACTCTAAAGGATGGTGCAAGTTTTGTTCCTTTTTG
CCATTTTAGCTTTAATGTGCTTGAAGCCACATGAAAGCAATGCTTGTCCAGATACATAGCCAAA
GGTTGTTATATTTTGGGACATGGAAAATGCTTGAGGTAGTAACTATTTTCATCAGGACATGGAA
AATTGGCTGCATCACAAATTATGTTGTTTCATGTTGCAAAATAGTTTTTTAATACTTTTTTATT
CTGCATGTGGTGTTAGTGTCTTACAGTGATTCCTCTGATGATTATATCCCCCACGATAATAATA
CTTGACATATCTACACCAAGTGGACATTATTCATTTGGATGTTACTTTTCCAGCTATACTTGCT
GTTCTTGCATAAACTTTGGAGTAAATTGCGTATCCCTTTAAGAGATAAACTGCTTGGTGCTCCT
ATCTGTGTACTTTTTATGCCCCCAACTAATAATGCAATCATATTACGCTGATAAACTGAATAAA
TAAATTAACAATATACTTCTGGTGGAAACCTTGTGTATCAGAATCTCATAAAGGATACCTCAAC
TTCAGCTTTGGACCTAAATGAAGGAACATCTTTGCAAAGTGCCGCTCTCCTCTTGAAATGTTTG
AAAATATTGGAAAATGCCACATTTCTAAGCGATGATAACAAGGTAATGTTCCTTATATATTCTG
TTTCAGTTTAGTACCCATTTTCTTCTTCTGTACCATCTTCTCCCCTCATTTGTTCTGTGCAAAA
TGTGCAAACAGTGTGACTTTGTATTTCTGCTTAACATTTTTCTTTTTTTCCTGAAAAGCAGTAT
AAACTCTTACACTCATTTTGCTTCTTGCAGACCCATTTGCTTAATATGAGTAGAAAATTGTACC
CGAAACGCTCCTCGCTTTCTTTTGTTGGTGTCATTATCAGTATTATTGAGTTATTATCAGGTAT
TTTTCTTAATAATACAATATGTCCGCTAACACAATAAAATGTTTTAAACATCCAGTATGTTAAA
GTTGCAGTCTGACGCCTATTTTGTTTTGCTGCAGCTCTTTCAATACTGCAGAATTCTTCTGTTG
TTTCCAGCTCTACATATCCGAAATCGTCTAAAGTCTCTCAACAGAGTTGCTCTGGTAATAACAA
ACACCAAATTTGTTTGATCAACTCGTTGGCTTTTCTGTGCACTGTTTCAATATAGTTTGGTCGC
CATTCAAGTCTCATTACAGATGTTGAACTTGACCTGACACGGTGGCACCAATATTTATAAAACG
CTACCTGATATTTTTAATATTTCATGTTTCCTGACCCAGATTATCTTGTTGGTTCCTCATATAA
GTTTAATTAGTGTCGTTCTTGAAACTTTGTTATGCAGCAGATGTCATGGGGGGAACTTCATTTA
ATGATGGAAAGCGCAAGAACTCGAAGAAAAAAAACCTTTTGTCGAACCAGACACGCCATAGTTG
CTTATCTTCAAAATCAGAAGTTTCTCATATTACTATATCTTCTGGTAGTGATGCTGGTCTGTCA
CAGAAGGCATTCAATTGTTCTCCATCTATATCAAGCAATGGGGCATCAAGTGGTTCATTAGGCG
AGAGACATAGCAATGGTGGTGCTTTGAAGTTGAATATAAAAAAGGATCGTGGCAATGCAAATCC
AATTAGAGGCTCAAGTGGGTGGATTTCAATAAGAGCGCACAGTTCTGATGGGAACTCCAGAGAA
ATGGCAAAAAGACGCCGTCTATCTGAAAATGTAATCACCGATAGTGGTGGCGGTGATGACCCTT
TTGCTTTTGATGATGTTGATCAGGAGCCTTCAAATTGGGAACTGCTTGGTCCAAAAAAGAAATC
GCCTCAGAAACATCAAGACAAATCAGGAAATGGAGTGCTAGTTGCAAGTCATGAACCAGACCAA
CCTGAAGATCTTAATCAGTCGGGTACAACATCTCTTTTTAGTGCTAAAGATGAATCCAGTCTTT
TGGAAGACTGCCTCTTGGCATCAGTTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 17830069-17831148(-)
17831045-17829016(+)
17829097-17829057(+)
Potential amino acid sequence MTPTKESEERFGYNFLLILSKWVLLSSLRNVAFSNIFKHFKRRAALCKDVPSFRSKAEVEVSFM
RFSNVEWQSIITSKILSRPPNSLNVSLKFPPTLDTVSEVS*(-)
MNQTNLKILISRVQHLFLVLKMNPVFWKTASWHQLRDF*(+)
MMDCHSTLENLIKDTSTSALDLNEGTSLQSAALLLKCLKILENATFLSDDNKTHLLNMSRKLYP
KRSSLSFVGVIISIIELLSALSILQNSSVVSSSTYPKSSKVSQQSCSDVMGGTSFNDGKRKNSK
KKNLLSNQTRHSCLSSKSEVSHITISSGSDAGLSQKAFNCSPSISSNGASSGSLGERHSNGGAL
KLNIKKDRGNANPIRGSSGWISIRAHSSDGNSREMAKRRRLSENVITDSGGGDDPFAFDDVDQE
PSNWELLGPKKKSPQKHQDKSGNGVLVASHEPDQPEDLNQSGTTSLFSAKDESSLLEDCLLASV
KRLLTLCPESEEILKRH*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021