Detail information of BGIOSGA033203_circ_g.3


General Information
CircRNA Name BGIOSGA033203_circ_g.3
ID in PlantcircBase osi_circ_008566
Alias Chr10:20818815_20819396(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17831915-17832496  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA033203
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033203_circ_g.1 BGIOSGA033203_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033203-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCACAGAGTGAAGAGACACAGAGAGATGTCATAGCACTCCTCTGTTCTGTATTCTTAGCAAGT
CAAGGTGCTAGTGAAGCTTCTGGAACTATATCACCGggttcttatgaacttagcaaatgacaac
ccatctggttgtgaattgattgcgtcatgtggtggacttaacaccatggcctccttgatcatga
agcatttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTCTTATGAACTTAGCAAATGACAACCCATCTGGTTGTGAATTGATTGCGTCATGTGGTGGA
CTTAACACCATGGCCTCCTTGATCATGAAGCATTTCCCCTCATTTTGTTTTGTCGTGGACAACA
ACTATAACACGAGAGATGTCAATCTTGATCATGAGTTATCATCTTCTCAAAACAGCAAGGCACA
CCAGGTCAAAATTAAGCAATTGCGAGATCATGAACTTGATTTTCTGGTTGCCATATTGGGCTTG
CTTGTTAACCTTGTAGAGAAGGATAGCCTTAATAGGTAAGTCCCTCACATGCTTCCTTCCATTT
GCTCAATTCATATCAGTGTTACTGTTCTGGCAGTTCCTTGGGGTCAGGACTCAGAAACATCCAA
TTAATGTTCATGTTCTCTTAACGACTCAGAAATACTTTATAACCTCTCCACAGGGTACGGCTTT
CATCTGCCCGTGTTCCTGTTGATCTATCTCAGAATCCACAGAGTGAAGAGACACAGAGAGATGT
CATAGCACTCCTCTGTTCTGTATTCTTAGCAAGTCAAGGTGCTAGTGAAGCTTCTGGAACTATA
TCACCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021